EST details — SGN-E392398

Search information 
Request: 392398Match: SGN-E392398
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181066Clone name: TUS-35-P24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181066 is on microarray TOM1 spot ID 1-1-1.4.17.21 [Order] [Tomato Microarray Database]
See unigene SGN-U579445 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C2571 [cLEC-16-H18] Trace: SGN-T26952 EST: SGN-E205063 Direction: 5' Facility: TIGR
Clone: SGN-C181066 [TUS-35-P24] Trace: SGN-T193723 EST: SGN-E392397 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E392398Length: 607 bp (809 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E392398 [] (trimmed) CTGATTTCCACACGTATTCCATCACTTGGAATCCACAACGCATCATATTTTATGTGGACGGAACGCCAATTAGAGAATACAAGAATAGTGAATCG
ATTGGAGTTTCATATCCAAAGAACCAACCCATGAGGATATATTCGAGTCTTTGGAATGCAGATGATTGGGCTACAAGAGGAGGACTTGTTAAGAC
TGATTGGAGCCAAGCACCCTTTAGTGCTTCTTACAGAAACTTCAGTGCTAATGCTTGTATTCCCACTTCTTCATCTTCTTGCAGTTCCATTTCTG
CAACTTCAACAAGCAATTCATGGTTGAATGAAGAGTTAGATAACACAAGCCAAGAGAGGCTCAAATGGGTGCAGAAGAATTACATGGTTTATGAT
TACTGCACTGATTCAAAGCGATTTCCACAGGGATTTCCAGCAGATTGTGTTCAGAATATCTGAGCATTAATAATGAAAAAATAGTGTATTACTTT
AAAAACTATTGTATTGATTCTTTTATTGTTTTGTACCCATCAGAAGAAGATGCAATAATTATTGAGGATTAGAAACATCTTAGTTTTGTACTAAG
TTATATAAACAATGAAATAGATACTTTTTTTTCTTCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392398] SGN-U579445 Tomato 200607 Build 2 169 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193724 [Download][View] Facility Assigned ID: FA0AAD23DH12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.949 Expected Error Rate: 0.0002 Quality Trim Threshold: 12.5