EST details — SGN-E392113

Search information 
Request: 392113Match: SGN-E392113
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176600Clone name: TUS-24-F22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176600 is on microarray TOM1 spot ID 1-1-3.2.9.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27090 [cLEF-42-I18] Trace: SGN-T60763 EST: SGN-E247719 Direction: 5' Facility: TIGR
Clone: SGN-C176600 [TUS-24-F22] Trace: SGN-T199160 EST: SGN-E397834 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E392113Length: 622 bp (839 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E392113 [] (trimmed) TGCAGGCACACCCGAGCTGGAGTATGGTCGAATGAACATTGGTAGCCGTCCATCAAAGCGTAAACGAAATGGAGGCATAGAAACACTTAGAGCCA
TTCCATGGATATTTGCATGGACCCAGACTAGGTTTCATCTGCCGGTCTGGCTTGGCTTTGGGGCAGCATTTAAGTATGCACTTAACAAGGATAAA
AAAAACCTCAATATGCTGCGGGACATGCACAAAAAATGGCCATTTTTTAGAGTTACTGCTGATTTGATTGAGATGGTGTTTGCTAAGGGAGACCC
CGGCATTGCTGCTTTATACGACAAGCTTCTGGTTTCTGAAGATTTGTGGTCCTTCGGTGAGCTTTTGAGGTCTGACTATGAGGAGACAAAGAGCC
TCCTGCTTAAGGTAAATTACTTTTCACCAAGTTCTCGCACTTAACATACGTTTTTACTCATCATGCTTGATCGCATGATATCCATGTTATCTAGG
GGGGGTTTGTATAGGTTGCTGGACACAAGGAACTTCTGGAGAACGATCCCTCCTTAAAACAACGACTCAGGCTGCGTGATTCCTATATCACTACT
TTAAATGTCTGCCAAGCTTACACACTAAAGAGGATTCGTGATCCAACCTACA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392113] SGN-U588970 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193439 [Download][View] Facility Assigned ID: FA0AAD12DC11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0054 Quality Trim Threshold: 14.5