EST details — SGN-E391943

Search information 
Request: 391943Match: SGN-E391943
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C177784Clone name: TUS-27-H6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C177784 is on microarray TOM1 spot ID 1-1-3.4.6.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C62171 [cLEM-1-L12] Trace: SGN-T83619 EST: SGN-E270246 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E391943Length: 612 bp (865 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E391943 [] (trimmed) GGTCCTCACTCTCTCTCTCTCTCTCCATCTCTTTGTGGGGACATTTCTCTCTTTCTCTCTCTGCAAGTTTCAATGGCTACTGAATTTGTCAACAA
GATTCATCCTGAATACCCTCAGATGATTTATGAAGCCCTTGATGCATTGCAACAAAAAGAAGGCTCAAACAAGTCATCAATATCAAAGTACATTG
AATCTAAGTATGGAAACATGAATGATGCACACTCAAAGTTGATAACTTACCATTTGGATAGAATGAAACAAACTGGTGAACTTATTTTCCTAAAA
AACAACTACATTAAACCTGGTCCAGATGCACCCCCTAAGCGTGGCCGCGGCCGACCACCTAAACCCAAACCTATATTGCCACAAGGAACAGATAT
TGCAGCTCCAAAGCCAAGAGGTCGCCCGAAAAAAGACCCCAATGCACCACCTACTCCCAAGAAACCAAAACCAACAAGTGTCCCTAGTGACTTAG
CTCCTGTTTCGAAAACCGGAAGGCCTAGAGGTAGGCCTAGGAAGATTAGGCCGCAGCCACCACAAAATGGTTTAGAGTGAAGCTGAAAATCCGCA
GACTTGGTTGATGGTGACGACTTTTATAACTCTGTTGTGTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391943] SGN-U570610 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193269 [Download][View] Facility Assigned ID: FA0AAD15DD03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.963 Expected Error Rate: 0.0038 Quality Trim Threshold: 14.5