EST details — SGN-E391825

Search information 
Request: 391825Match: SGN-E391825
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176745Clone name: TUS-24-L23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176745 is on microarray TOM1 spot ID 1-1-2.4.9.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27779 [cLEF-45-I12] Trace: SGN-T61272 EST: SGN-E246537 Direction: 5' Facility: TIGR
Clone: SGN-C176745 [TUS-24-L23] Trace: SGN-T193398 EST: SGN-E392072 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E391825Length: 596 bp (811 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E391825 [] (trimmed) AATACTTTTACTTGGCCCTCTGTATTTCTCTCTGTCGCCATTGTGTCACTGTTGCATAGTTTCTAGAGAGAGAAAGTGCAGAGTTTTTGTGTTGA
ATTGGAAGGAGAGAGAGAGAGAGTTGAGTTGAGGAAGGAGGAGTTCGCCGATGGGTCCATCGACGGCGACGACGGGGCAGAGCAACAGCAGTTAC
GATCTGTCATTTAAGATCTTGTTGATCGGAGATTCTGGAGTTGGAAAGAGTAGCTTGCTTGTTAGCTTCATTTCTAATGCCGTTGACGATCTGGC
CCCTACCATTGGCGTTGATTTTAAGATCAAGACACTCACTGTTAGTGGGAAAAAACTGAAGCTTACCATTTGGGACACAGCTGGGCAGGAGAGGT
TCAGGACACTGACAAGCTCCTACTACAGAGGTGCTCAAGGGATCATTCTTGTCTATGATGTAACAAGAAGAGAGACCTTCACAAACCTGTCTGAT
GTGTGGGCAAAAGAGGTGGAGCTGTATAGTAATAATCAGGATTGTGTAAAGATGCTGGTTGGAAATAAAGTTGACAGAGAATCCGAGAGAGCTGT
GACCAGGGAAAAAAGGCATTGCCTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391825] SGN-U571016 Tomato 200607 Build 2 6 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193151 [Download][View] Facility Assigned ID: FA0AAD12CF12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0069 Quality Trim Threshold: 14.5