EST details — SGN-E391706

Search information 
Request: 391706Match: SGN-E391706
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C177846Clone name: TUS-27-J20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C177846 is on microarray TOM1 spot ID 1-1-5.2.6.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C64119 [cLEM-5-C7] Trace: SGN-T85145 EST: SGN-E271340 Direction: 5' Facility: TIGR
Clone: SGN-C177846 [TUS-27-J20] Trace: SGN-T1473 EST: SGN-E378539 Direction: 5' Facility: Giov. Lab
Clone: SGN-C177846 [TUS-27-J20] Trace: SGN-T193281 EST: SGN-E391955 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E391706Length: 611 bp (835 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E391706 [] (trimmed) GAACTGGTTGTATTATAATTTATTACACATTTGAGTCTTACAGAGCGCTTAAATGTCCTAGTTTTAGACTGTCTGAAACTGTATTCACTTTCATT
TAAGATGTGGGTTATCATAAAAACAGCCGCAGCGACGGTTGAAGCCGATCCCACCGAATCCACCGCCAACAGATCGGCCGGCTCGTATTTACGCC
GACGGAATCTACGATCTCTTTCACTTCGGACATGCTCGCGCCCTCGAACAAGCTAAGAAACTATTGCCTAACGCTCAGCTTCTTGTTGGATGCTG
CAATGATGAAATCACTCACAAATTCAAGGGAAAAACTGTTATGAATGAAAAGGAGCGATATGAATCTTTGCGCCACTGCAGATGGGTTGATGAAG
TTATTCCAGATGCGCCTTGGGTTGTAACCCCAGAGTTCATTGAGAAACATCGGATTGACTATGTGGCACATGACGCTCTTCCTTATGCGGATGCA
AGTGGAGCTGGAAATGATGTTTACGAGTATGTTAAGTCCATTGGTAAGTTCTTGGAGACCAAGCGGACTGATGGAATATCTACTTCAGATTTAAT
AATGAGGATTGTAAAAGACTACAATGAATATGTGATGCGCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391706] SGN-U568335 Tomato 200607 Build 2 20 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193032 [Download][View] Facility Assigned ID: FA0AAD15DE10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.984 Expected Error Rate: 0.0037 Quality Trim Threshold: 14.5