EST details — SGN-E390988

Search information 
Request: 390988Match: SGN-E390988
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185383Clone name: TUS-47-D21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185383 is on microarray TOM1 spot ID 1-1-4.4.9.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70887 [cLER-16-D2] Trace: SGN-T95728 EST: SGN-E284455 Direction: 5' Facility: TIGR
Clone: SGN-C185383 [TUS-47-D21] Trace: SGN-T192315 EST: SGN-E390989 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390988Length: 644 bp (814 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390988 [] (trimmed) ATCATTAATATAGTTCTTGTAAACTTGATTGAAATTCGAATTAATCATACACGGAATAAAAAGATGGAAAACAAGGGAAAATGAATACAATTTCT
CAAGGGAAAACCCAAAGGAGAATTCAAACAAACTGTCCCTATAAACATAGGGCAATTAGTTTTTCTAGAACTTAGTATCCTTCGGGCTTGTAAGC
GATGAAACTGATGCACTGCACTTGACGAACATTGTCGAATCCGATGATACGGACCCATGCCTGTGGGTAAGCCTTCTTTGCCTCCTGCACCTCAG
CCAAGACCTGGGTTGCATCAGTGCACCCGAACATGGGCAACTTCCACATGGTCCAGTATCTGCCATCGTAGTATCCTGGTGACTTATGGTTCTCA
CGGTACACAAATCCGTGCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCATTTTTCAATAGGTACTCAATTTCGCTGAGCAATTGCTCGTCGGA
CCGACAGAGGAAGCAGCAAAATATGAAGTACAATCCAAGAGTATCCTCCTCTCGCCGGAAGAGCAGGAAGGCTCATTTCACGGCGCCTTCAAGTG
CGCGCCGGATTTTAATGAGCGCACCCTTATCGTCCGAGTTACGTGTAAAGTACAACGTAAGATCTATGCCGGTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390988] SGN-U579485 Tomato 200607 Build 2 53 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192314 [Download][View] Facility Assigned ID: FA0AAD35CB11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.980 Expected Error Rate: 0.0033 Quality Trim Threshold: 14.5