EST details — SGN-E390887

Search information 
Request: 390887Match: SGN-E390887
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185638Clone name: TUS-47-O12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185638 is on microarray TOM1 spot ID 1-1-5.3.9.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C74824 [cLES-11-K11] Trace: SGN-T99856 EST: SGN-E286325 Direction: 5' Facility: TIGR
Clone: SGN-C185638 [TUS-47-O12] Trace: SGN-T191979 EST: SGN-E390653 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390887Length: 632 bp (866 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390887 [] (trimmed) GAGAATCAATTCTGCAACAATGAAGTACAATCCAAGGGTTTCCTCATCTCGCCGCAAGAGCAGAAAGGCCCATTTCACTGCTCCATCAAGCGTTC
GCAGGGTGTTGATGAGCGCACCGCTTTCATCTGAGTTACGTGCCAAGTACAACGTCAGATCTATCCCGGTAAGGAAAGACGATGAAGTTCAAGTA
GTAAGAGGAACCTACAAGGGCCGTGAAGGAAAAGTTATGCAAGTGTACCGTAAGAAATGGGTTATTCACATTGAACGTATAACTAGAGAGAAGGT
TAACGGATCTACTGTTAATGTTGGCATTAATCCATCTAAGGTTGTTGTTACCAAACTCAGACTCGATAAGGATCGTAAGTCTTTGTTGGATCGTA
AGGCTAAGGGTCGTGCTGCTGCTGACAAGGATAAGGGTACAAAGTTCACTGCTGAGGAGGTCATGCAGACTATTGATTAGATTTAAAGTCATCTT
TCTTCTATCTCTGCTGAAGAGAGGTTATATCAGTACGTTTTTGGTTTATTAGGGTTTTTGACATCTCTGAATTTTTGGGTTTATTTGATGTTATA
ATTGAATGTTGCTGAAAGTTGTTAATTTTGGGTTGATTAATATAACTCAAGTTTAATATTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390887] SGN-U578367 Tomato 200607 Build 2 72 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192213 [Download][View] Facility Assigned ID: FA0AAD35BH06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0019 Quality Trim Threshold: 12.5