EST details — SGN-E390872

Search information 
Request: 390872Match: SGN-E390872
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185540Clone name: TUS-47-K10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185540 is on microarray TOM1 spot ID 1-1-7.3.9.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C75752 [cLES-15-F11] Trace: SGN-T100825 EST: SGN-E287320 Direction: 5' Facility: TIGR
Clone: SGN-C185540 [TUS-47-K10] Trace: SGN-T191962 EST: SGN-E390636 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E390872Length: 606 bp (896 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390872 [] (trimmed) ATAATTTATATTGAAAAATTAACAAAAAACTCTCTTACAAGTTGCAACAACACAATATTACACGTGCTATACTTGCTACCAACACAAAAAGGACA
CCCCTTAAAAAATTACAACATTTGAAATAAAAACAATAATAAACTCTTCTTTACAAAACAACTTTTCAGTAATTTATATTGGAAAATTTATTTAA
CTATTGGTTTAAAAAAACCATATTCAAAATTGACTATTTTCCCAATATTGATTTGATCCACCAAAACCCTTTAGGGTCCTTTGGGGCATCTTCAC
CAACTGGGGGAGGATCACCTTGAGGTGTCTTGTGAATTTTGCCCACATCATATCCCACTTCTTTTGCCTTCCCAACAAATTGGTTGTATATTTCT
TCATCAACAAGTGGTTGCCCACATAAAATCCAAAAAAATTTCTTACTAGGCTGACCAATCAAAGCCTATTGATAATCATCATCACTATATAAAAC
CCAATAATCACCAACAATAGGAAAAATTGGCAAAAAAGGTGGGAAATAAAATTTCACTTTAAGTTTTGCTTCAACCCTTTTTGGATCAGCTTTAT
AGGCATTCCCTTCAATTGAACCCCTTTTACCACCCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390872] SGN-U578306 Tomato 200607 Build 2 35 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192198 [Download][View] Facility Assigned ID: FA0AAD35BF05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.897 Expected Error Rate: 0.0234 Quality Trim Threshold: 14.5