EST details — SGN-E390824
Search information |
Request: 390824 | Match: SGN-E390824 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C184158 | Clone name: TUS-44-A20 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184158 is on microarray TOM1 spot ID 1-1-5.1.16.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C17146 [cLED-18-M5] | Trace: SGN-T53099 | EST: SGN-E237796 | Direction: 5' | Facility: TIGR |
Clone: SGN-C184158 [TUS-44-A20] | Trace: SGN-T197636 | EST: SGN-E396310 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E390824 | Length: 656 bp (858 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E390824 [] (trimmed)
CAGGAAAAAGAGTCCTTCATCAACAATCGGTGATTTGGAAGGTTCAACTAAGAGTCACAAGAAGAAGAAAGCGCGTGAACCAAAAGACGACCAGG
AGGAGGGACCTGAAGTGATGAAGGCTAATGATGAGAGATCAGATGATGAGATGTCAAAACGAACTAAAACTGAGGAGAAAGACGGTAAATCTGAA
GAAGGATCCAAGAAGGACAAGAAGAAGCATAAGCGAAGCTCAAATAAATCATCCTCAAAGAAGGAAGCTGGAGAAGTTAAAACCAAGAAAACTCC
TTCAAATTCATCAAAAAGCTCAAAGAAAAATGATAACAACGATGCAAATTCAGAAGTGCATTCAAAGAAGAAAACTACTGAAGTAGTTAAGGGAA
ATTCATCTACACCAAAAAAACCTAGTTCAAAAGACAAAACTGGGAAAAAAGATCCGAATGGGAAGGGCCATAAGAAAGCGAATAAATTGAAGCCA
AGTGATGATGAACTCAGAAGTGCAATTTGTGAAGTTCTAAAAGAAGTTGACTTTAATACGGCCACCTTTACCGACATTGTGCAAATGCTTGCCAA
GCGGTATGATACCGATCTTACACTCAGAAAGACATCTGTTAAGAATATGATCCAGGATGAGCTCACTAGGCTAGTCGATGAGGCTG
AGGAGGGACCTGAAGTGATGAAGGCTAATGATGAGAGATCAGATGATGAGATGTCAAAACGAACTAAAACTGAGGAGAAAGACGGTAAATCTGAA
GAAGGATCCAAGAAGGACAAGAAGAAGCATAAGCGAAGCTCAAATAAATCATCCTCAAAGAAGGAAGCTGGAGAAGTTAAAACCAAGAAAACTCC
TTCAAATTCATCAAAAAGCTCAAAGAAAAATGATAACAACGATGCAAATTCAGAAGTGCATTCAAAGAAGAAAACTACTGAAGTAGTTAAGGGAA
ATTCATCTACACCAAAAAAACCTAGTTCAAAAGACAAAACTGGGAAAAAAGATCCGAATGGGAAGGGCCATAAGAAAGCGAATAAATTGAAGCCA
AGTGATGATGAACTCAGAAGTGCAATTTGTGAAGTTCTAAAAGAAGTTGACTTTAATACGGCCACCTTTACCGACATTGTGCAAATGCTTGCCAA
GCGGTATGATACCGATCTTACACTCAGAAAGACATCTGTTAAGAATATGATCCAGGATGAGCTCACTAGGCTAGTCGATGAGGCTG
Unigenes |
Current Unigene builds | |||||
[SGN-E390824] | SGN-U576784 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T192150 [Download][View] | Facility Assigned ID: FA0AAD32BA10RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.927 | Expected Error Rate: 0.0029 | Quality Trim Threshold: 14.5 |