EST details — SGN-E390620

Search information 
Request: 390620Match: SGN-E390620
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185444Clone name: TUS-47-G10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185444 is on microarray TOM1 spot ID 1-1-7.3.9.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C77928 [cLES-3-L9] Trace: SGN-T97571 EST: SGN-E284550 Direction: 5' Facility: TIGR
Clone: SGN-C185444 [TUS-47-G10] Trace: SGN-T191947 EST: SGN-E390621 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390620Length: 641 bp (889 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390620 [] (trimmed) ACAAAATTATGCAGAATCATAAATATTGATTTTAGAAAATTGGGTACAACTATCTAATAGCTGAATGCTCTTACAAAAACAAAAAAAAACTCAGT
AATTTTTCCCAGTTCAAAAAAAAAAAAAGGAATAAGAATGAACATTTACCACAAATTGATTTAAGCAATAGAGACTTTAGCACCAGCTTCTTCGA
GCTGTTTCTTAGCATCTTCAGCCTCATCCTTGGAAACACCCTCCTTAAATTTCTTAGGCAATCCTTCAATCAATTCCTTAGCCTCTTTCAATGCC
AAACTTGTTAAAGCCCTAACAGCCTTAATGGTAGCAATTCTAGCATTACTCGGCACTTCATCGATGACTACGTCAAATTCCGTCTTCTCTTCAAC
CACAGCTGGAGCATCTGCGGCTGCGCCACCAGGGGCAGCGACAACGGCAGCAGGAGCGAAGGATGCGGCTGAAACACCAAGCTTATCCTGAAGGT
ACTCAACCAGTTTCTGGGCGTCAGCTAGGGTTAAAGTGGAGATTTCATCCCCGAGCTGGACTACCTTCTCCGGTGCTTCGACGGCGGCGAGAGGG
CGGACAAAAGTGGCTCGGCGGTGGTGGAGTTTGGAAGTGCGAATGGAGAGTTGTACGGTTTTGGTGGGGAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390620] SGN-U580694 Tomato 200607 Build 2 26 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191946 [Download][View] Facility Assigned ID: FA0AAD35BD05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0049 Quality Trim Threshold: 12.5