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EST details — SGN-E390605

Search information 
Request: 390605Match: SGN-E390605
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185358Clone name: TUS-47-C20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185358 is on microarray TOM1 spot ID 1-1-5.3.9.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C69789 [cLER-12-J23] Trace: SGN-T94411 EST: SGN-E283444 Direction: 5' Facility: TIGR
Clone: SGN-C185358 [TUS-47-C20] Trace: SGN-T192173 EST: SGN-E390847 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390605Length: 567 bp (854 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390605 [] (trimmed) CATCATTGATTTAAGCAAAAACAGAAACTTCAACAAAATTAAATGTCACTAATGAACTGAAACGGACTGATATAAATTCTCTTTAGCTAAAATAG
CAATACCAGACAAAATGAGTGAAAAATCAATCGATTTTCTGCATGATATCCTCAGAAGTGAACTTAGTGCCCTTGTCCTTGTCAGCAGCAGCTCG
TCCCTTAGCCTTGCGGTCGAGTAGTGATCTCCTGTCTTTGTCAAGCCTTAGCTTTGTAACAACAACCTTCGAAGGATGAATACCAACGTTCACAG
TAGATCCATTGACCTTCTCTCTGGTTATACGTTCAATGTGGATCACCCATTTCTTACGGTACACTTGGACAACTTTCCCGTCACGGCCCTTGTAA
GTTCCACGAACAACCTGAACTTCGTCATCTTTCCTCACCGGCATAGATCTTACGTTGTACTTTACACGTAACTCGGACGATAAGGGTGCGCTCAT
TAAAATCCGGCGCGCACTTGAAGGCGCCGTGAAATGAGCCTTCCTGCTCTTCCGGCGAGAGGAGGATACTCTTGNATTGTACTTCATATTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390605] SGN-U579485 Tomato 200607 Build 2 53 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191931 [Download][View] Facility Assigned ID: FA0AAD35BB10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.988 Expected Error Rate: 0.0052 Quality Trim Threshold: 14.5