Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E390546

Search information 
Request: 390546Match: SGN-E390546
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184207Clone name: TUS-44-C21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184207 is on microarray TOM1 spot ID 1-1-4.3.16.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24143 [cLED-7-F19] Trace: SGN-T50395 EST: SGN-E231886 Direction: 5' Facility: TIGR
Clone: SGN-C184207 [TUS-44-C21] Trace: SGN-T192110 EST: SGN-E390784 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390546Length: 544 bp (856 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390546 [] (trimmed) GAAAAAGAGTCCTTCATCAACAATCGGTGATTTGGAAGGTTCAACTAAGAGTCACAAGAAGAAGAAAGCGCGTGAACCAAAAGACGACCAGGAGG
AGGGACCTGAAGTGATGAAGGCTAATGATGAGAGATCAGATGATGAGATGTCAAAACGAACTAAAACTGAGGAGAAAGACGGTAAATCTGAAGAA
GGATCCAAGAAGGACAAGAAGAAGCATAAGCGAAGCTCAAATAAATCATCCTCAAAGAAGGAAGCTGGAGAAGTTAAAACCAAGAAAACTCCTTC
AAATTCATCAAAAAGCTCAAAGAAAAATGATAACAACGATGCAAATTCAGAAGTGCATTCAAAGAAGAAAACTACTGAAGTAGTTAAGGGAAATT
CATCTACACCAAAAAAACCTAGTTCAAAAGACAAAACTGGGAAAAAAGATCCGAATGGGAAGGGCCATAAGAAAGCGAATAAATTGAAGCCAAGT
GATGATGAACTCAGAAGTGCAATTTTGTGAAGTTCTTAAAAGAATTGACTTTAATTCGGCCACCTTTAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390546] SGN-U576784 Tomato 200607 Build 2 20 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191872 [Download][View] Facility Assigned ID: FA0AAD32AB11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.903 Expected Error Rate: 0.0017 Quality Trim Threshold: 14.5