EST details — SGN-E390417

Search information 
Request: 390417Match: SGN-E390417
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183040Clone name: TUS-41-C6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183040 is on microarray TOM1 spot ID 1-1-3.3.3.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24968 [cLEE-1-C1] Trace: SGN-T58539 EST: SGN-E244090 Direction: 5' Facility: TIGR
Clone: SGN-C24968 [cLEE-1-C1] Trace: SGN-T58540 EST: SGN-E244091 Direction: 3' Facility: TIGR
Clone: SGN-C183040 [TUS-41-C6] Trace: SGN-T191744 EST: SGN-E390418 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390417Length: 403 bp (913 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390417 [] (trimmed) GGGCCCCCCCTCGAGGATGGTCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCTACCCTCCATCTTGTCCTCCGTCTCCGTGGTGGTATGCA
GATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCCGACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGG
AGGGAATTCCTTCAGACCAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGTTTTTTTTTTTTTTTTTTTACTCCTTTTAGCGTCCTCTGAAT
CAAACCCAGACTCAATCTTGGATTTTTTTGACTTTTTCTCTTTGGTTTTCTTATCAGTAGGAGTTTCAATATCAGTTTTGGGTGTCCCTCTCCAT
TTTTTTCTTGGATAGCTCCGAGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390417] SGN-U577265 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191743 [Download][View] Facility Assigned ID: FA0AAD29BB03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.952 Expected Error Rate: 0.0096 Quality Trim Threshold: 14.5