EST details — SGN-E390222

Search information 
Request: 390222Match: SGN-E390222
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182496Clone name: TUS-39-L14
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182496 is on microarray TOM1 spot ID 1-1-3.4.8.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C96401 [cLEY-15-N18] Trace: SGN-T119656 EST: SGN-E307233 Direction: 5' Facility: TIGR
Clone: SGN-C182496 [TUS-39-L14] Trace: SGN-T1727 EST: SGN-E378607 Direction: 5' Facility: Giov. Lab
Clone: SGN-C182496 [TUS-39-L14] Trace: SGN-T191772 EST: SGN-E390446 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390222Length: 568 bp (883 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390222 [] (trimmed) AAGAGGAAGAGTCCAGTTGAAGCGAATAGAGAACAAAATTAACCGTCAAGTTACCTTCTCGAAACGTCGATCTGGTTTGCTGAAGAAAGCCCATG
AGATCTCTGTGCTTTGTGATGCTGAGGTTGGTTTGATTGTTTTTTCTACTAAAGGAAAACTCTTTGAATATGCCAACGATTCCTGCATGGAGAGG
ATACTTGAAAGATATGAAAGATACTCATTTGCTGAGAAACAGCTTGTTCCTACTGATCATACCTCCCCGGTAAGCTGGACCCTTGAACATGCAAA
ACTTAAGGCCAGACTTGAGGTTCTGCAGAGGAACCAAAAGCATTATGTGGGAGAAGATTTGGAGTCCTTAAGTATGAAGGAACTTCAGAATCTGG
AGCACCAGCTTGATTCAGCTCTTAAACACGTTCGAGCAAGAAAGAATCAATTGATGCATGAGTCCATTTCTGTGCTTCAAAAAAAGGACAGAGCA
TTGCAGGAGCAAAACAACCAGCTTTCGAAGAAGGTGAAGGAGAGGGAGAAAGAGGTGGCACAGCAAAATCAGTGGGGAATCAACTCATCTTCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390222] SGN-U578128 Tomato 200607 Build 2 67 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191548 [Download][View] Facility Assigned ID: FA0AAD27DF07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.955 Expected Error Rate: 0.0045 Quality Trim Threshold: 14.5