EST details — SGN-E390142

Search information 
Request: 390142Match: SGN-E390142
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183039Clone name: TUS-41-C5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183039 is on microarray TOM1 spot ID 1-1-4.3.3.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C109781 [cLPT-1-A15] Trace: SGN-T177583 EST: SGN-E366158 Direction: 5' Facility: TIGR
Clone: SGN-C109781 [cLPT-1-A15] Trace: SGN-T177584 EST: SGN-E366159 Direction: 3' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E390142Length: 693 bp (905 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E390142 [] (trimmed) ACCAAACAAAAGACATGTCTATTTTTTATTTCATATAAAAAAGCATAATCAATTATATATGATTTAAAAATCATATCATAAAAGTACAACTATAA
CAAAATTTAAAAAGTCTTAAAAATTGAAATAAAACGAAACTTTTTTTATTTAAGAGCTAAGGCATCTCCAAAGGTACTGAAGGGAAATGGTACGT
TACGCTCCTTTAGTTCGATAGCTAGCTGTTCCGCTTCCATATAGCCGATCTCAATTTTTTCGATGAAATTCTGATACACAGAGGAATTCAAATTT
TCATATGAAATTCCCGCGTCTAGGCTTTTTTCACGTTTTTTCTCTTCTTCAAACTCTTCTTCAATCTCCATTAAAGCCAACACCCCCTCTCTAAT
AGCATTTCGACGATGTACACTGAGGGAGCCAGTGTCATCAAGGTTTTGTGGAGGATTCACGTCCATAAACTTATCCAGAACTGAATTGACACAAG
GATACCCAATCGAGTAAACACAAGTTTCGTCGTCAGGGGAAAAAACTACCGTGGCATTTGGACTGTCGCAAAGCATTGATAAACTCACTTTCTTT
CTTAAAAAGGCCATAACCGCCTTTTAGAGAATGTGACACTCCTCTTCATTTTGTTTTCTATCTTTTCACTGCGGGATTCTTCTGCGACCAAGCCT
TGCCATGATAAAGTCCCTTCCCCTGAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390142] SGN-U575462 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191468 [Download][View] Facility Assigned ID: FA0AAD29AB03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.951 Expected Error Rate: 0.0113 Quality Trim Threshold: 14.5