EST details — SGN-E390092

Search information 
Request: 390092Match: SGN-E390092
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173839Clone name: TUS-17-C21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173839 is on microarray TOM1 spot ID 1-1-4.3.17.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5674 [cLEC-32-K12] Trace: SGN-T29835 EST: SGN-E207622 Direction: 5' Facility: TIGR
Clone: SGN-C173839 [TUS-17-C21] Trace: SGN-T191633 EST: SGN-E390307 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390092Length: 623 bp (846 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390092 [] (trimmed) GGAATCCCATACAAACAATCTTGTCGACGATGGCAACGCCGATGGCTGAGGATAGCAACTTCGAAGATGACCAGCTCCATGCTATGTCCACTGAA
GATATTATTAGGGCTTCTCGCCTTCTTGACAATGAAATTCGAATCATAAAGGAAGAGCTGCAGAGGACGAATCTAGAGTTGGATTCATTCAAGGA
GAAGATAAAGGAGAACCAAGAAAAAATTAAGCTCAATAAGCAACTTCCTTACTTGGTCGGCAACATTGTTGAGATTTTGGAAATGAATCCTGAAG
AAGAAGCTGAGGAGGATGGTGCAAATATTGATCTCGACTCACAAAGGAAGGGCAAGTGTGTTGTACTGAAAACATCCACACGCCAGACAATTTTC
TTGCCTGTTGTTGGTCTTGTTGATCCTGACAACTTAAAACCTGGTGATCTGGTTGGAGTAAATAAAGACAGTTATTTGATATTGGACACCTTGCC
ATCTGAATATGATTCTCGGGTAAAGGCAATGGAAGTTGATGAAAAGCCAACTGAAGACTACAATGATATTGGAGGCTTGGAGAAACAGATTCAAG
AACTTGTCGAGGCAATTGTGCTGCCTATGACACACCAAGAACGGTTCCAGAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390092] SGN-U575333 Tomato 200607 Build 2 61 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191418 [Download][View] Facility Assigned ID: FA0AAD5AB11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0014 Quality Trim Threshold: 14.5