EST details — SGN-E390090

Search information 
Request: 390090Match: SGN-E390090
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173831Clone name: TUS-17-C13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173831 is on microarray TOM1 spot ID 1-1-4.3.17.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5648 [cLEC-32-I6] Trace: SGN-T29974 EST: SGN-E207761 Direction: 5' Facility: TIGR
Clone: SGN-C173831 [TUS-17-C13] Trace: SGN-T191631 EST: SGN-E390305 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E390090Length: 641 bp (876 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E390090 [] (trimmed) CAAAATCTCTCTCAATTTACAGAGAAGAAATATAGTTTTAAGGGAGTATTTTCTCTTATTGTTTCCCTTAAGGAATCGGAAAACCCAGGAAGAAG
AAACTTGTTTTCTTTATTAATTGCCTATAAATCACCCCTTTCCCTTTGAAGGTTGATTGAAATAGTCTTTGGAATTTTCTTTTTCTTTCTTGGGT
GTATTTATTTGCACAAATTTTGATTTCCTTTTTCGTTAAAATGGGAACAGAAGTTTTGCGGCCACAAAATTGTTTGATTGACAGGTTCAGGGAAC
CACAACCGGCGGCGGCGTTTCATCGTCGGAAAAATAATGGGTATTATAATAACAACGGTTACCGGAAACCGGTTGTTAGAACGGAGAAAAAGAAG
TTGAACAGCAAGATCCAGAACCAATCTGAGCCGTCGATTTCTAGGAGATCTGAGGAGTCGAAACCGGTTCAGATCCCTGGGAGAGTTACACCGGT
GGTAGACGGCGGAATCGTGATGGGTCAGGTAATGATTTTGAGAAGGGGAGAGTCGTTGGATTCTCTGAACCCTAATATCAGGAAAGAGAACAAAA
CAACGTCGTCGGGTAAGAAGAAGAAACAACCGGCGAATGGTACCGGTGATGAATTTGCTACAGTTTACGGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E390090] SGN-U579174 Tomato 200607 Build 2 106 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T191416 [Download][View] Facility Assigned ID: FA0AAD5AB07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0026 Quality Trim Threshold: 14.5