EST details — SGN-E378806
| Search information |
| Request: 378806 | Match: SGN-E378806 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183855 | Clone name: TUS-43-E5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183855 is on microarray TOM1 spot ID 1-1-4.1.19.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C9381 [cLEC-5-L16] | Trace: SGN-T23773 | EST: SGN-E200938 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183855 [TUS-43-E5] | Trace: SGN-T196217 | EST: SGN-E394891 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183855 [TUS-43-E5] | Trace: SGN-T199686 | EST: SGN-E398360 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378806 | Length: 407 bp (1119 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378806 [] (trimmed)
CTTCGTTGCAAGGTGGCGTTTCATGCTTTAAGGTTTTCGCCATCAATCTTAGAACTTGGTAACAAACTTACTGAGAGAATGAGGAGCAAGGGACC
ATATGTTGCTCTTCATTTGAGAATGGAGAAGGATGTGTGGGTGAGAACAGGATGTCTTCCTGGTTTAAGCCATGAGATTGATGAGATGATAAATA
ATGAGAGGAAGCAAAGGCCTGAGCTCTTAACTTCGCGTTCAAACATGACCTACCATGACAGAAAGCTTGCTGGTCTCTGCCCTTTGAATGCTTTG
GAGGTTACAAGGTTGCTCANAGCATTGGGAGCACCAAAGAGAGCAAGAATCTATTGGGCTGGAGGAATTCCTTTGGGTGGAAAGAAGCATTTGCA
CCATTGACAAGTGATTCCCTCACTTTT
ATATGTTGCTCTTCATTTGAGAATGGAGAAGGATGTGTGGGTGAGAACAGGATGTCTTCCTGGTTTAAGCCATGAGATTGATGAGATGATAAATA
ATGAGAGGAAGCAAAGGCCTGAGCTCTTAACTTCGCGTTCAAACATGACCTACCATGACAGAAAGCTTGCTGGTCTCTGCCCTTTGAATGCTTTG
GAGGTTACAAGGTTGCTCANAGCATTGGGAGCACCAAAGAGAGCAAGAATCTATTGGGCTGGAGGAATTCCTTTGGGTGGAAAGAAGCATTTGCA
CCATTGACAAGTGATTCCCTCACTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378806] | SGN-U565042 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1786 [Download][View] | Facility Assigned ID: TUS43E5.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0110 | Quality Trim Threshold: 14.5 |
Working
