EST details — SGN-E378800
| Search information |
| Request: 378800 | Match: SGN-E378800 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182670 | Clone name: TUS-40-C20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182670 is on microarray TOM1 spot ID 1-1-5.3.5.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C118662 [cTOB-13-M23] | Trace: SGN-T132011 | EST: SGN-E321100 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182670 [TUS-40-C20] | Trace: SGN-T187837 | EST: SGN-E375943 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182670 [TUS-40-C20] | Trace: SGN-T187838 | EST: SGN-E375944 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378800 | Length: 531 bp (1120 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378800 [] (trimmed)
GGTGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGG
CTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTT
TCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTAGAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCC
AGCGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATAT
CGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGA
AATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCNTTGGCTGGTGAAAAAT
CTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTT
TCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTAGAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCC
AGCGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATAT
CGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGA
AATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCNTTGGCTGGTGAAAAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378800] | SGN-U573842 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1744 [Download][View] | Facility Assigned ID: TUS40C20.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0004 | Quality Trim Threshold: 14.5 |
Working
