EST details — SGN-E378786
| Search information |
| Request: 378786 | Match: SGN-E378786 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C180684 | Clone name: TUS-35-A2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180684 is on microarray TOM1 spot ID 1-1-7.1.17.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C36918 [cLEG-40-G13] | Trace: SGN-T71734 | EST: SGN-E256765 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C180684 [TUS-35-A2] | Trace: SGN-T193591 | EST: SGN-E392265 | Direction: 5' | Facility: INRA |
| Clone: SGN-C180684 [TUS-35-A2] | Trace: SGN-T197701 | EST: SGN-E396375 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378786 | Length: 461 bp (1277 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378786 [] (trimmed)
TCCCCTCGATTTAGAAGTCGTTTCGAGATCTGCTAAGCATCTAAGCAAAAGGCCAAAGCTTAAGGAATATGCTGTACAACAAGGAGTATTCGAGT
CTCTCCATCGTGACATGATGGTGGGGTTCGGAAAGTGGGATTTTGATCCTATGGATCTTAAGAACCCTTTTCGTAATGGTGAAGGCTCGGTCCAC
ATGTGGCATGGTGACGAAGACTGGATTGTACCTGTTACGTTACAACGTTACGTTGCAGAAAGGCTTTCGTGGATACAGTACCATGAAATGCCCAA
TGTTGGACATCTAGTTATGCTTGATCCAGCCATGAATGAGGTTATCTGGAAGACATTTTTGACAGGAAGACAAAGAACAAATAGTGTGCATTCTT
AAAGAGGAAAACTAATATTTCCTTGTAAGCAAAATCTTTCTAAATAGTTGTTTATTTAATTCCAACTATACATTCCNAATA
CTCTCCATCGTGACATGATGGTGGGGTTCGGAAAGTGGGATTTTGATCCTATGGATCTTAAGAACCCTTTTCGTAATGGTGAAGGCTCGGTCCAC
ATGTGGCATGGTGACGAAGACTGGATTGTACCTGTTACGTTACAACGTTACGTTGCAGAAAGGCTTTCGTGGATACAGTACCATGAAATGCCCAA
TGTTGGACATCTAGTTATGCTTGATCCAGCCATGAATGAGGTTATCTGGAAGACATTTTTGACAGGAAGACAAAGAACAAATAGTGTGCATTCTT
AAAGAGGAAAACTAATATTTCCTTGTAAGCAAAATCTTTCTAAATAGTTGTTTATTTAATTCCAACTATACATTCCNAATA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378786] | SGN-U572017 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1641 [Download][View] | Facility Assigned ID: TUS35A2.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.981 | Expected Error Rate: 0.0207 | Quality Trim Threshold: 12.5 |
Working
