EST details — SGN-E378714
| Search information |
| Request: 378714 | Match: SGN-E378714 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C181229 | Clone name: TUS-36-G19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181229 is on microarray TOM1 spot ID 1-1-6.3.14.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23469 [cLED-5-H24] | Trace: SGN-T49710 | EST: SGN-E231094 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C181229 [TUS-36-G19] | Trace: SGN-T187646 | EST: SGN-E375088 | Direction: 3' | Facility: INRA |
| Clone: SGN-C181229 [TUS-36-G19] | Trace: SGN-T187647 | EST: SGN-E375089 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378714 | Length: 808 bp (1166 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378714 [] (trimmed)
GGATCCCCCGGGGTGCATTAATACGGAACCAGGTTGGGACTTGAGATCAGCTATTTTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGA
AATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTA
AAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCAT
TAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATT
ACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCA
ATCTCTGAAAGAACAAAAAAACTTAAAATCCTGTATTGTTTGTTTGTTTGATTTTAGTTTGAAATAAAATCTAAAAAAGCAAAAAAAGTTGTCAA
TTTTGTGAATTTAAAATATGTAAAATATTATTATCTACTCTCATAATTTTAAAAATATTACATGGAAAGTATTATCTTTTAAGTAAATTATTTTT
GTTAGGAGTAAGATAAGGGAAAAATGGGGAATTAAATTTTAACGAATAAGATAAAAGCTCAAATAATCAATCAACTGACACCAAAAAAAGGATAC
TTCTATTTTAAAACANATTAAAAAGAAAAATATTACAAATAAATTTTG
AATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTA
AAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCAT
TAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATT
ACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCA
ATCTCTGAAAGAACAAAAAAACTTAAAATCCTGTATTGTTTGTTTGTTTGATTTTAGTTTGAAATAAAATCTAAAAAAGCAAAAAAAGTTGTCAA
TTTTGTGAATTTAAAATATGTAAAATATTATTATCTACTCTCATAATTTTAAAAATATTACATGGAAAGTATTATCTTTTAAGTAAATTATTTTT
GTTAGGAGTAAGATAAGGGAAAAATGGGGAATTAAATTTTAACGAATAAGATAAAAGCTCAAATAATCAATCAACTGACACCAAAAAAAGGATAC
TTCTATTTTAAAACANATTAAAAAGAAAAATATTACAAATAAATTTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378714] | SGN-U573488 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1670 [Download][View] | Facility Assigned ID: TUS36G19.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.906 | Expected Error Rate: 0.0019 | Quality Trim Threshold: 20.5 |
Working
