EST details — SGN-E378679
| Search information |
| Request: 378679 | Match: SGN-E378679 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C176541 | Clone name: TUS-24-D11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C176541 is on microarray TOM1 spot ID 1-1-6.4.9.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C26963 [cLEF-42-C1] | Trace: SGN-T60697 | EST: SGN-E247653 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C176541 [TUS-24-D11] | Trace: SGN-T193118 | EST: SGN-E391792 | Direction: 5' | Facility: INRA |
| Clone: SGN-C176541 [TUS-24-D11] | Trace: SGN-T193365 | EST: SGN-E392039 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378679 | Length: 862 bp (1270 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378679 [] (trimmed)
TGCAATTGCTGATAACCTAGGCGAGCTTTCTGCAAAAGGACAGATTCAAACAGTCTGCTTTGATAATCTTGGTCTTACACTTGCTGCAACCCTGA
ACATACTGTCTGCTAATAATCCAAGATTGCAGGCTGGTCTACCATTTGTGATGTACCCTGTCTTCTCTGTGCTTGACCTTTTTGGTATTTATCAA
GGACTAAAGCATGTGCATCTGCAGACATTAACTAAGGATAGGCTTAACATCATTATAAGCACATGGATTCAACAAGGATTTGTCCCATCTCCTGA
AGAGGTGAGTAAACAGGAGGGTATTGGCTTATCTTGGAGCAGAGGTAATTTTTAACTTAAATTTTGCCGTAACAAGGCCTTATTGCTTGGTTTAT
CGCTACATTTTTAGTAAAGGAACATTCTTAATCAGCTTTAATCAGGCAGAGAGCCATGGTCAATCAGAATTGGTTGCTTAAATCCTAGACGTTGC
ACAGCAAAGCTATCTGTGATGACGATGCAATCTTTGAATAGTGAAGACTTATATTTCTTGAGCCCAGAGAGTTTGACTAGTGAACTGAAAAGGAA
CCAGGAGTATGGTGTCCTACTTTCTCTGCGGGAAGGGGCAGAAACTACAGATGTGATCAGGGGCATATTGCATGCAAGTTATGTCCGCAAGGGTA
TAGAAGCTTGTGGTAGTTCTAGTGCAGTTCTCAAGCAATGGTTTAACCTGGTTGAAGATGGCAAGAGGTTAACAGAACAAAACTTGAGTTTCTTG
TATGAGCAAATGTTGTCTTTAGGGTGGGCATGTAAGAATATTCTGTTGAGCACGCAGGAGCAAGCCCGCTATAGTTTCATAGCTGACTGAGCATA
TATCTAC
ACATACTGTCTGCTAATAATCCAAGATTGCAGGCTGGTCTACCATTTGTGATGTACCCTGTCTTCTCTGTGCTTGACCTTTTTGGTATTTATCAA
GGACTAAAGCATGTGCATCTGCAGACATTAACTAAGGATAGGCTTAACATCATTATAAGCACATGGATTCAACAAGGATTTGTCCCATCTCCTGA
AGAGGTGAGTAAACAGGAGGGTATTGGCTTATCTTGGAGCAGAGGTAATTTTTAACTTAAATTTTGCCGTAACAAGGCCTTATTGCTTGGTTTAT
CGCTACATTTTTAGTAAAGGAACATTCTTAATCAGCTTTAATCAGGCAGAGAGCCATGGTCAATCAGAATTGGTTGCTTAAATCCTAGACGTTGC
ACAGCAAAGCTATCTGTGATGACGATGCAATCTTTGAATAGTGAAGACTTATATTTCTTGAGCCCAGAGAGTTTGACTAGTGAACTGAAAAGGAA
CCAGGAGTATGGTGTCCTACTTTCTCTGCGGGAAGGGGCAGAAACTACAGATGTGATCAGGGGCATATTGCATGCAAGTTATGTCCGCAAGGGTA
TAGAAGCTTGTGGTAGTTCTAGTGCAGTTCTCAAGCAATGGTTTAACCTGGTTGAAGATGGCAAGAGGTTAACAGAACAAAACTTGAGTTTCTTG
TATGAGCAAATGTTGTCTTTAGGGTGGGCATGTAAGAATATTCTGTTGAGCACGCAGGAGCAAGCCCGCTATAGTTTCATAGCTGACTGAGCATA
TATCTAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378679] | SGN-U563820 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1409 [Download][View] | Facility Assigned ID: TUS24D11.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
