EST details — SGN-E378673
| Search information |
| Request: 378673 | Match: SGN-E378673 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175274 | Clone name: TUS-20-O16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175274 is on microarray TOM1 spot ID 1-1-1.3.13.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C24215 [cLED-7-I23] | Trace: SGN-T50321 | EST: SGN-E231812 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175274 [TUS-20-O16] | Trace: SGN-T189946 | EST: SGN-E377735 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378673 | Length: 980 bp (1207 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378673 [] (trimmed)
CAAGATTCATCTTTTCTGATTTTTATTTTTGGGAAATGGAGTTCTTGGAAAGACCTGATGCTCAATTGATTATTGGGGTTGCTGTTGCAGCTGTT
GCTGTTGGTGCTACAGCTTATTTTTACTTCTCTTCCAAGAAGTCCAAAGTATGTTTGAACCCTGAAGAATTCAGGGCATTTAAGCTTGTTAAGCG
CACACAACTTAGCCATAATGTGGCGAAATTTAGATTTGAACTTCCGACGCCCACTTCTGTGTTGGGGCTACCCATTGGACAACATATTAGTTGCA
GGGGCAAAGATAGTCAAGGTGAAGAGGTTGTTAAACCATACACACCAACTACTTTGGACTCTGACATTGGATACTTTGAGTTAGTTATAAAGATG
TATCCCCAAGGAAGGATGTCACATCATTTCCGGGAAATGCGCGAGGGTGATTACATGGAAGTGAAGGGACCCAAGGGGCGCTTTAAGTACCATCC
TGGTCAAGTTAGAGCATTTGGAATGCTTGCAGGAGGCTCTGGCATTACCCCGATGTTCCAGGTTGCTAGAGCTATTCTTGAAAATCCCAACGACG
TGACGAAGGTGCACCTGATATATGCTAATGTTACTTCTGAAGATATTCTTCTGAAGGAAGAGTTGGAGGGCCTTACTGTTAACTATCCTGACCGT
TTCAAAGTTTATTACGTCTTGAATCAGCCTCCTGAAGAATGGAGTGGTGGTGTGGGATTTGTCTCCAAAGAAATGATCCAAGCTCATTGCCCTGC
CCCGGCAGATGATATTAAGATACTGAGGTGTGGTCCACCACCGATGAAACAGGCATGGCTGCTCATCTTGAAGCCCTCGGATACTCACCGGAGAT
GCAATTCCATTCTAAACTGTTTTTTCTTGGTTTCCATCTTATCCCCGCGTTGAAATTATTGCGAAATATAGTCTGGAGAAGACATATTGACATTG
TCATTTTTCAGTGAGAGACTCATAAACCTG
GCTGTTGGTGCTACAGCTTATTTTTACTTCTCTTCCAAGAAGTCCAAAGTATGTTTGAACCCTGAAGAATTCAGGGCATTTAAGCTTGTTAAGCG
CACACAACTTAGCCATAATGTGGCGAAATTTAGATTTGAACTTCCGACGCCCACTTCTGTGTTGGGGCTACCCATTGGACAACATATTAGTTGCA
GGGGCAAAGATAGTCAAGGTGAAGAGGTTGTTAAACCATACACACCAACTACTTTGGACTCTGACATTGGATACTTTGAGTTAGTTATAAAGATG
TATCCCCAAGGAAGGATGTCACATCATTTCCGGGAAATGCGCGAGGGTGATTACATGGAAGTGAAGGGACCCAAGGGGCGCTTTAAGTACCATCC
TGGTCAAGTTAGAGCATTTGGAATGCTTGCAGGAGGCTCTGGCATTACCCCGATGTTCCAGGTTGCTAGAGCTATTCTTGAAAATCCCAACGACG
TGACGAAGGTGCACCTGATATATGCTAATGTTACTTCTGAAGATATTCTTCTGAAGGAAGAGTTGGAGGGCCTTACTGTTAACTATCCTGACCGT
TTCAAAGTTTATTACGTCTTGAATCAGCCTCCTGAAGAATGGAGTGGTGGTGTGGGATTTGTCTCCAAAGAAATGATCCAAGCTCATTGCCCTGC
CCCGGCAGATGATATTAAGATACTGAGGTGTGGTCCACCACCGATGAAACAGGCATGGCTGCTCATCTTGAAGCCCTCGGATACTCACCGGAGAT
GCAATTCCATTCTAAACTGTTTTTTCTTGGTTTCCATCTTATCCCCGCGTTGAAATTATTGCGAAATATAGTCTGGAGAAGACATATTGACATTG
TCATTTTTCAGTGAGAGACTCATAAACCTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378673] | SGN-U583893 | Tomato 200607 | Build 2 | 45 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1360 [Download][View] | Facility Assigned ID: TUS20O16.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.979 | Expected Error Rate: 0.0090 | Quality Trim Threshold: 14.5 |
Working
