EST details — SGN-E378671
| Search information |
| Request: 378671 | Match: SGN-E378671 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175220 | Clone name: TUS-20-M10 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175220 is on microarray TOM1 spot ID 1-1-7.1.13.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C24132 [cLED-7-E7] | Trace: SGN-T50308 | EST: SGN-E231799 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175220 [TUS-20-M10] | Trace: SGN-T189935 | EST: SGN-E377724 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175220 [TUS-20-M10] | Trace: SGN-T189936 | EST: SGN-E377725 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378671 | Length: 925 bp (1173 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378671 [] (trimmed)
CTAATGGATCCCCCGGTTTGCAGGAATTCGGAACGAGGCTTCTTGAACCACCTGCTGAATAAGAAACTGCTGCAAAGAAACGAGGTGCTAAATCT
GCCAAGATTCAAGCACAAACCATGGAACAACAAGCCTTAGCAGCAGCAGCTCCAATGGAATCCATGAGATTTTTAGTTGAAAACATCTGGAATGA
TTCTGTGGAAAAAGCTGACAAAAGGACTACTGATGTGAAATGTGGCATGAAGCGTAAGCAAGAGGATTTGGAGTCAAACACAAAAGATCCGGCTA
CAGGCGAAAAGGAAGTACTTTGGCGTGCCAACTTTGAAGAATTCATTCGCCGCTTGAGACACAAGGCTTGTGTTGCAAATGTGAAAGTACGTGTC
AACAATGATGCTGCCATTGTTCTTGCTGCGACCCTGGAGTTGAGTAGACATTCTGAAACTAAATTGAGAATTGATAACTCAGTTCCCCAGTCCAT
AAATGCTATTTATGATGAGGTGATAAAGAGGGAAGGTGGTCTTGGTATGGACCTGGAGCGTATCAGAGCTTCCCTTGATGATTTAGGATGTGAAG
CCCCATTGATGGAAATAGATGAAACTTATAGTGTAGATTTGAAGAACATTATTGAACAGGCTCGCATTGAAGAGGTGGAATCCATTGTATTAAAA
AGATATGGGAGGGAGGCCTACAGGATGTTCAGATTACTGTCGAAAGCTGATCGTCTTGTTGAAACGGATAAGATTTCAGATACCACATTTGTTGA
AAAGAAAGACGCAGTCAAGATTCTATTTAAGCTGTGGAAAGATGACTACTTAGAGATGAAGAAGTTATTGCACGTGCACCAAAGCAATCAGAATT
CATTCTGTGGAAAATTATAAGCAGTCTCTTTGGGGACATATTCTAGATGAATGTACCATGCTGCCCTAAT
GCCAAGATTCAAGCACAAACCATGGAACAACAAGCCTTAGCAGCAGCAGCTCCAATGGAATCCATGAGATTTTTAGTTGAAAACATCTGGAATGA
TTCTGTGGAAAAAGCTGACAAAAGGACTACTGATGTGAAATGTGGCATGAAGCGTAAGCAAGAGGATTTGGAGTCAAACACAAAAGATCCGGCTA
CAGGCGAAAAGGAAGTACTTTGGCGTGCCAACTTTGAAGAATTCATTCGCCGCTTGAGACACAAGGCTTGTGTTGCAAATGTGAAAGTACGTGTC
AACAATGATGCTGCCATTGTTCTTGCTGCGACCCTGGAGTTGAGTAGACATTCTGAAACTAAATTGAGAATTGATAACTCAGTTCCCCAGTCCAT
AAATGCTATTTATGATGAGGTGATAAAGAGGGAAGGTGGTCTTGGTATGGACCTGGAGCGTATCAGAGCTTCCCTTGATGATTTAGGATGTGAAG
CCCCATTGATGGAAATAGATGAAACTTATAGTGTAGATTTGAAGAACATTATTGAACAGGCTCGCATTGAAGAGGTGGAATCCATTGTATTAAAA
AGATATGGGAGGGAGGCCTACAGGATGTTCAGATTACTGTCGAAAGCTGATCGTCTTGTTGAAACGGATAAGATTTCAGATACCACATTTGTTGA
AAAGAAAGACGCAGTCAAGATTCTATTTAAGCTGTGGAAAGATGACTACTTAGAGATGAAGAAGTTATTGCACGTGCACCAAAGCAATCAGAATT
CATTCTGTGGAAAATTATAAGCAGTCTCTTTGGGGACATATTCTAGATGAATGTACCATGCTGCCCTAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378671] | SGN-U564338 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1355 [Download][View] | Facility Assigned ID: TUS20M10.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0092 | Quality Trim Threshold: 14.5 |
Working
