EST details — SGN-E378586
| Search information |
| Request: 378586 | Match: SGN-E378586 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C181056 | Clone name: TUS-35-P14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181056 is on microarray TOM1 spot ID 1-1-3.4.17.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C2440 [cLEC-16-A22] | Trace: SGN-T26844 | EST: SGN-E204955 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C181056 [TUS-35-P14] | Trace: SGN-T193720 | EST: SGN-E392394 | Direction: 5' | Facility: INRA |
| Clone: SGN-C181056 [TUS-35-P14] | Trace: SGN-T193966 | EST: SGN-E392640 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378586 | Length: 947 bp (1171 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378586 [] (trimmed)
CAGGTTGAACGACAGCAGTGAGTATTATGTTGAAGGTGCTCAAGATGAGCCTAACTTTGATGTTCATGAGCAAAAACCAAACCATCTCAATCTGT
TGAACATCAGTGCTGAGAGATTCAAGGAGACGATGCCTCTTCAGCAACAATCTCATCCAAACAAGGATGAACTGGTCACAAACTTAGACTTCAGT
CTGAAGAGGAAGCAAGCTAATGAACCTACTGTGATGATGGATCAAAAGATATACACATGCGAGTTTCTTCAATGCCCTCACAATGAACTTCGCCA
TGGTTTTCAGGACAGATCTTCCAGAGACAATCATCAATTTGCTTGCCTTTACCGAAGTTCTACCTGTTTTGGAGTTTCAAACTTTCAGATTAATG
AAGTCAAGCCAGTTGTGTTCCCTCAACAATATGTCCAGCCAAAGTCATCTGCTCTGCCTGTTAATCAAGGTCCACCTTCCTTTGATCTATCTGGT
ATAGGAGTTCCTGAAGATGGGCAAAGGATGATTAATGAGCTTATGTCAATCTATGATAGTGATGTACAAGGAAGCAAAAGGCAAAATAGGGGGAA
CATTGCATTGACCAAAGAGCAGCCTCATCAACAACCTCGTGTCCACCAGGACAACTACCTGCTCAGCCAAGGGATAATGGACGGAAATATCTTCA
AAAACACTAATATTTCCACAACTCAGTCTATGCTCCCCACAGTCGATCCATTTGATCAATCCAAGGCTTTCAATGCAGGCTCCAACGACAACTTC
CATTTCATGTTTGGGGTCTCCATTCAACATACAATCTACCCATTTATAACGGAAATCTACCTAGCATTGGATACGATACCACACCAAAACAAGAT
GCTCCTATTTGGTACTAGCCAGCCAGAAGTCTGTTGACATGTTGTATATCCAGTAGTCAGTTTTGGGCTCATAAATATAGCGATTTCTCATG
TGAACATCAGTGCTGAGAGATTCAAGGAGACGATGCCTCTTCAGCAACAATCTCATCCAAACAAGGATGAACTGGTCACAAACTTAGACTTCAGT
CTGAAGAGGAAGCAAGCTAATGAACCTACTGTGATGATGGATCAAAAGATATACACATGCGAGTTTCTTCAATGCCCTCACAATGAACTTCGCCA
TGGTTTTCAGGACAGATCTTCCAGAGACAATCATCAATTTGCTTGCCTTTACCGAAGTTCTACCTGTTTTGGAGTTTCAAACTTTCAGATTAATG
AAGTCAAGCCAGTTGTGTTCCCTCAACAATATGTCCAGCCAAAGTCATCTGCTCTGCCTGTTAATCAAGGTCCACCTTCCTTTGATCTATCTGGT
ATAGGAGTTCCTGAAGATGGGCAAAGGATGATTAATGAGCTTATGTCAATCTATGATAGTGATGTACAAGGAAGCAAAAGGCAAAATAGGGGGAA
CATTGCATTGACCAAAGAGCAGCCTCATCAACAACCTCGTGTCCACCAGGACAACTACCTGCTCAGCCAAGGGATAATGGACGGAAATATCTTCA
AAAACACTAATATTTCCACAACTCAGTCTATGCTCCCCACAGTCGATCCATTTGATCAATCCAAGGCTTTCAATGCAGGCTCCAACGACAACTTC
CATTTCATGTTTGGGGTCTCCATTCAACATACAATCTACCCATTTATAACGGAAATCTACCTAGCATTGGATACGATACCACACCAAAACAAGAT
GCTCCTATTTGGTACTAGCCAGCCAGAAGTCTGTTGACATGTTGTATATCCAGTAGTCAGTTTTGGGCTCATAAATATAGCGATTTCTCATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378586] | SGN-U585761 | Tomato 200607 | Build 2 | 45 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1665 [Download][View] | Facility Assigned ID: TUS35P14.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0032 | Quality Trim Threshold: 14.5 |
Working
