EST details — SGN-E378556
| Search information |
| Request: 378556 | Match: SGN-E378556 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C179636 | Clone name: TUS-32-E10 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179636 is on microarray TOM1 spot ID 1-1-7.1.1.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C80099 [cLET-11-E10] | Trace: SGN-T105301 | EST: SGN-E292838 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179636 [TUS-32-E10] | Trace: SGN-T185974 | EST: SGN-E372479 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179636 [TUS-32-E10] | Trace: SGN-T185975 | EST: SGN-E372480 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378556 | Length: 907 bp (1197 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378556 [] (trimmed)
GATCCCCCGGGGTTGCAGGCCATGGAAAACCGCCGTATCCACCGCCGTCACCAATTCGTCTCATCTTTCATCGGCACTCGACAAACCCTTTACCA
CGCCATCCCAAAAGCTCTTATCTTTAGCCGTTAAAACCCTCCCAAAACCCTACCACCACCATCACAGAACTCTCATTACTGCGGCCTCCAAGAAC
CCATTAACCGACGTCGTTTCGTCCAAACCCATCCCGGATGGACGTTCTTTTGATTCTTATTTCCACGACGATGACGATAAACCCCGTGAAGAGTG
CGGCGTGGTCGGTATTTACGGTGATTCTGAAGCTTCTCGTCTTTGCTATTTAGCCCTTCACGCGCTTCAACACCGTGGCCAAGAAGGCGCCGGCA
TTGTTTGCGTTAATGATAACGTTCTCAAGTCGATTACAGGTGTTGGGTTGGTCTCTGATGTGTTTAGTGAATCGAAACTTGACCAACTCCCTGGC
GATTTGGCTATTGGTCATGTAAGGTATTCTACTGCTGGGTCTTCTATGTTAAAAAATGTTCAACCTTTTGTTGCTAGTTACAGATTTGGGTCAGT
TGGTGTTGCCCATAATGGGAATTTAGTCAATTACAAACAACTTCGTGGTGAGCTTGAAGAGAATGGCTCAATTTTCAATACTAGTTCTGATACTG
AGGTGGTTCTCCATCTTATTGCTATATCAAAGGCAAGACCTTTTCTTTTAAGGATTGTTGAGGCTTGTGAAAAGATTGAGGGTGCTTATTCTATG
GTGTTTGCTACTGAGGATAAGTTGGTTGCTGTTAGGGATCCTTATGGGTTTAGGCCATTGGTTATGGGAAGGAGAAGTAATGGTGCTGTTGTTTT
CGCGTCGGAGACGTGTGCTTTGGATCTGATTGAGGCTACCTATGAAAGGGAG
CGCCATCCCAAAAGCTCTTATCTTTAGCCGTTAAAACCCTCCCAAAACCCTACCACCACCATCACAGAACTCTCATTACTGCGGCCTCCAAGAAC
CCATTAACCGACGTCGTTTCGTCCAAACCCATCCCGGATGGACGTTCTTTTGATTCTTATTTCCACGACGATGACGATAAACCCCGTGAAGAGTG
CGGCGTGGTCGGTATTTACGGTGATTCTGAAGCTTCTCGTCTTTGCTATTTAGCCCTTCACGCGCTTCAACACCGTGGCCAAGAAGGCGCCGGCA
TTGTTTGCGTTAATGATAACGTTCTCAAGTCGATTACAGGTGTTGGGTTGGTCTCTGATGTGTTTAGTGAATCGAAACTTGACCAACTCCCTGGC
GATTTGGCTATTGGTCATGTAAGGTATTCTACTGCTGGGTCTTCTATGTTAAAAAATGTTCAACCTTTTGTTGCTAGTTACAGATTTGGGTCAGT
TGGTGTTGCCCATAATGGGAATTTAGTCAATTACAAACAACTTCGTGGTGAGCTTGAAGAGAATGGCTCAATTTTCAATACTAGTTCTGATACTG
AGGTGGTTCTCCATCTTATTGCTATATCAAAGGCAAGACCTTTTCTTTTAAGGATTGTTGAGGCTTGTGAAAAGATTGAGGGTGCTTATTCTATG
GTGTTTGCTACTGAGGATAAGTTGGTTGCTGTTAGGGATCCTTATGGGTTTAGGCCATTGGTTATGGGAAGGAGAAGTAATGGTGCTGTTGTTTT
CGCGTCGGAGACGTGTGCTTTGGATCTGATTGAGGCTACCTATGAAAGGGAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378556] | SGN-U569321 | Tomato 200607 | Build 2 | 28 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1542 [Download][View] | Facility Assigned ID: TUS32E10.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.986 | Expected Error Rate: 0.0053 | Quality Trim Threshold: 14.5 |
Working
