EST details — SGN-E378555
| Search information |
| Request: 378555 | Match: SGN-E378555 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C179610 | Clone name: TUS-32-D8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179610 is on microarray TOM1 spot ID 1-1-1.4.1.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C179610 [TUS-32-D8] | Trace: SGN-T186293 | EST: SGN-E372812 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179610 [TUS-32-D8] | Trace: SGN-T186294 | EST: SGN-E372813 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378555 | Length: 915 bp (1245 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378555 [] (trimmed)
AGGGTCGAACAAGNCAGATTCTGGTTCTCGCACTGATACTTCAACTGACATGGATGGAGATGATAGAAATCAAAGGATTGAGACGGGTCAATCCA
GGGCTATTGCAGCTTCTGATTCCAGTGACAAATCAAAAGAAAAAGTCTTGGATCAGAAGACATTGCGGAGACTTGCCCAAAATCGTGAAGCTGCT
AGAAAAAGTAGACTGAGGAAAAAAGCATATGTACAACAGCTGGAGAATAGCCGGTTGAAGCTATCACAGTTGGAGCAGGACCTTCAGCGAGCACG
TCAACAGGGGAAGTACATCTCAAACATGGCAGATCAATCAAATGGAGCGGGCGCCAGTGGGACCTTAGCATTTGATGCAGAATATAGTCGATGGT
TAGAAGAACACAACAAACACATCAATGAATTGAGAACCGCTGTCAATTCACATGCAAGTGACCCTGAACTGCGAAGTATTGTGAATAATGTCACT
GCACATTACGATGAGGTCTTTAGGGTGAAAGGAAATGCAGCCAAGGCAGACGTATTCCATGTCTTGTCAGGGATGTGGAAAACCCCTGCCGAGCG
ATGTTTTATGTGGATTGGTGGCTTCCGCCCCTCGGAACTTCTTAAGCTTCTAGTCAATCAGTTGGAGCCTCTGACCGAGCAACAGTTAGCTGGCA
TTTACAACTTGCAGCAGTCATCCCATCAAGCAGAAGATGCCCTTTCACAAGGTATGGAGGCGTTGCAGCAATCCTTGGCAGAGACATTAGCTAAC
GGATCTCCTGCTACTGAAGGGTCATCAGGAGATGTAGCTAATTATATGGGTCAGATGGCAATGGCTATGGGGAAAATAGGGACTCTTGAAGGTTT
TCTCCGTCAGGCGGACAACCTGCGTCAACAGACATTGCAACAAATGCATCGCATATTGAC
GGGCTATTGCAGCTTCTGATTCCAGTGACAAATCAAAAGAAAAAGTCTTGGATCAGAAGACATTGCGGAGACTTGCCCAAAATCGTGAAGCTGCT
AGAAAAAGTAGACTGAGGAAAAAAGCATATGTACAACAGCTGGAGAATAGCCGGTTGAAGCTATCACAGTTGGAGCAGGACCTTCAGCGAGCACG
TCAACAGGGGAAGTACATCTCAAACATGGCAGATCAATCAAATGGAGCGGGCGCCAGTGGGACCTTAGCATTTGATGCAGAATATAGTCGATGGT
TAGAAGAACACAACAAACACATCAATGAATTGAGAACCGCTGTCAATTCACATGCAAGTGACCCTGAACTGCGAAGTATTGTGAATAATGTCACT
GCACATTACGATGAGGTCTTTAGGGTGAAAGGAAATGCAGCCAAGGCAGACGTATTCCATGTCTTGTCAGGGATGTGGAAAACCCCTGCCGAGCG
ATGTTTTATGTGGATTGGTGGCTTCCGCCCCTCGGAACTTCTTAAGCTTCTAGTCAATCAGTTGGAGCCTCTGACCGAGCAACAGTTAGCTGGCA
TTTACAACTTGCAGCAGTCATCCCATCAAGCAGAAGATGCCCTTTCACAAGGTATGGAGGCGTTGCAGCAATCCTTGGCAGAGACATTAGCTAAC
GGATCTCCTGCTACTGAAGGGTCATCAGGAGATGTAGCTAATTATATGGGTCAGATGGCAATGGCTATGGGGAAAATAGGGACTCTTGAAGGTTT
TCTCCGTCAGGCGGACAACCTGCGTCAACAGACATTGCAACAAATGCATCGCATATTGAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378555] | SGN-U571820 | Tomato 200607 | Build 2 | 26 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1541 [Download][View] | Facility Assigned ID: TUS32D8.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0061 | Quality Trim Threshold: 14.5 |
Working
