EST details — SGN-E378537
| Search information |
| Request: 378537 | Match: SGN-E378537 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C177741 | Clone name: TUS-27-F11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177741 is on microarray TOM1 spot ID 1-1-6.2.6.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C62041 [cLEM-1-E24] | Trace: SGN-T83726 | EST: SGN-E270353 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C177741 [TUS-27-F11] | Trace: SGN-T183143 | EST: SGN-E370906 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177741 [TUS-27-F11] | Trace: SGN-T183144 | EST: SGN-E370907 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378537 | Length: 832 bp (1293 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378537 [] (trimmed)
GCTTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATGGTTCTCCTATCAACAGTTTCGAGT
TCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCT
TTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTGGTGTCACTCATTA
CTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAA
GAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGAC
TATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACA
TGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATAT
TTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAATATGAAGGTTTTTTTTTATAATAAAC
GAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAGGGA
TCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCT
TTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTGGTGTCACTCATTA
CTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAA
GAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGAC
TATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACA
TGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATAT
TTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAATATGAAGGTTTTTTTTTATAATAAAC
GAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAGGGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378537] | SGN-U565875 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1461 [Download][View] | Facility Assigned ID: TUS27F11.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
