EST details — SGN-E378496
| Search information |
| Request: 378496 | Match: SGN-E378496 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C173551 | Clone name: TUS-16-G21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C173551 is on microarray TOM1 spot ID 1-1-4.3.18.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C3386 [cLEC-20-G23] | Trace: SGN-T27575 | EST: SGN-E205793 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C173551 [TUS-16-G21] | Trace: SGN-T192862 | EST: SGN-E391536 | Direction: 5' | Facility: INRA |
| Clone: SGN-C173551 [TUS-16-G21] | Trace: SGN-T197809 | EST: SGN-E396483 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378496 | Length: 710 bp (1138 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378496 [] (trimmed)
GGTGTCTTTTGGCAACTTTATAAGTACCACACCCCTCCAATCACTTTTTCCCATTCACACAACCATTAAAAAAAAAAAAAATTCAAAAAAAAAAA
GAAAAAGGGATTTAAGTATTCTTCATTTTTTTTCCGCCCAAAAAAAAAGGGAACCAAAAAACTGAAAAGGGGGCAAACCCTTTTAAAGGCTCTAA
ACGTTCGGGTCGTCGGTTCCGGCAAAAAATTTTGGGTTTTAGCCCAGGGGGTCGGAACCGACCAATCCGTTGGGAATCAAATTTTACCTTTTTTT
CTCCAAAATTACCGGGTTGTTCTGAACAACCTTGTCGGCGCCGGCAGGGAAAATCCTGATTTCTTCGATTTCCGACGTTATACGACACTGGACCC
TTACGTTGAGGATCTTCAACATATTCTCGAGGCTCTTGAAATCAATCGTTGTTCCTATGTCGAACACTCGGTCTCCGCCATGATCGAAATTCTCG
CTTCAATTCGCCGCCCTGAACTCTTCTCTAAACTCATCCTCATGGGAGCTTCGCCCAAATTCTTGAAGGAGGAAAACTACCAGGGGGGATTTGAA
CTCGGAAAAATAAAAAAGGGGTTTTCAGCAAGGGAGGCAAATTATGAAGCAGGGGTCAAGGGTTTTGCCCCGTAAGCCGTCGGAGCCAACTTTCC
GGCGGTTGTACGAGAATTCAGAAGAACATTGTTCAATATGAGACC
GAAAAAGGGATTTAAGTATTCTTCATTTTTTTTCCGCCCAAAAAAAAAGGGAACCAAAAAACTGAAAAGGGGGCAAACCCTTTTAAAGGCTCTAA
ACGTTCGGGTCGTCGGTTCCGGCAAAAAATTTTGGGTTTTAGCCCAGGGGGTCGGAACCGACCAATCCGTTGGGAATCAAATTTTACCTTTTTTT
CTCCAAAATTACCGGGTTGTTCTGAACAACCTTGTCGGCGCCGGCAGGGAAAATCCTGATTTCTTCGATTTCCGACGTTATACGACACTGGACCC
TTACGTTGAGGATCTTCAACATATTCTCGAGGCTCTTGAAATCAATCGTTGTTCCTATGTCGAACACTCGGTCTCCGCCATGATCGAAATTCTCG
CTTCAATTCGCCGCCCTGAACTCTTCTCTAAACTCATCCTCATGGGAGCTTCGCCCAAATTCTTGAAGGAGGAAAACTACCAGGGGGGATTTGAA
CTCGGAAAAATAAAAAAGGGGTTTTCAGCAAGGGAGGCAAATTATGAAGCAGGGGTCAAGGGTTTTGCCCCGTAAGCCGTCGGAGCCAACTTTCC
GGCGGTTGTACGAGAATTCAGAAGAACATTGTTCAATATGAGACC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378496] | SGN-U596678 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1282 [Download][View] | Facility Assigned ID: TUS16G21.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.961 | Expected Error Rate: 0.0215 | Quality Trim Threshold: 14.5 |
Working
