EST details — SGN-E378490
| Search information |
| Request: 378490 | Match: SGN-E378490 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172890 | Clone name: TUS-14-L8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172890 is on microarray TOM1 spot ID 1-1-1.4.20.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14233 [cLEC-7-E19] | Trace: SGN-T25210 | EST: SGN-E201928 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172890 [TUS-14-L8] | Trace: SGN-T188110 | EST: SGN-E374802 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172890 [TUS-14-L8] | Trace: SGN-T188111 | EST: SGN-E374803 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378490 | Length: 989 bp (1187 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378490 [] (trimmed)
CTTCATTTGAGAATGGAGAAGGATGTGTGGGTGAGAACAGGATGTCTTCCTGGTTTAAGCCATGAGATTGATGAGATGATAAATAATGAGAGGAA
GCAAAGGCCTGAGCTCTTAACTTCGCGTTCAAACATGACCTACCATGACAGAAAGCTTGCTGGTCTCTGCCCTTTGAATGCTTTGGAGGTTACAA
GGTTGCTCAAAGCATTGGGAGCACCAAAGAGAGCAAGAATCTATTGGGCTGGAGGAATTCCTTTGGGTGGAAAAGAAGCATTGCAACCATTGACA
AGTGAATTCCCTCACTTTTTTAACAAAGAGGATCTTGCGTTGCCCGGGGAACTTGAGCCATTTTCCAAGAAAGCATCCCTTATGGCTGCTCTCGA
CTACATAGTAACCGAAAATAGCAATGTTTTCATGCCATCTCATGGTGGAAACATGGGACATGCTCTCCAGGGACAAAGGGCCTATGCAGGGCACA
AAAAGACTATCACTCCCAACAAAAGACAGATGCTTCGACATTTTCTGAACTCATCACTTTCTGAAACAGAATTCAACAGAATAATACTGGACTTG
CATAGAGATTCCTTAGGTCAGCCAGAATTGAGGAAACCAGGAAGGGATGTAACAAAGTACCCTGTCCCAGAGTGCATGTGCAATGGTACTATGAA
CCATTCATCGACATAACTCCATATCGGTGAAATAACATGTGATGAAGCACCCCTGCAGCTAATCATACATTCTTACAACATCCTGAGAACTTTGG
ATTAAGCCTCACTGTGATTCAGACGAGCAGACGGGGTTGGTAGAGGTGCAATACAATTTTTTTCGACTATGTTTAGAGGTGAATCCTTGGTGGGT
ATAAACTTGTGGTACATGAGACTGATGCAACAGACTGGGAAAATGAATCTCTAATACAAAAGCACATCTTATACAGTCCAATCCTATTTCTAGAA
CTGTATGTTAATATGTTTAATGAACACAGCTTCTTTTAT
GCAAAGGCCTGAGCTCTTAACTTCGCGTTCAAACATGACCTACCATGACAGAAAGCTTGCTGGTCTCTGCCCTTTGAATGCTTTGGAGGTTACAA
GGTTGCTCAAAGCATTGGGAGCACCAAAGAGAGCAAGAATCTATTGGGCTGGAGGAATTCCTTTGGGTGGAAAAGAAGCATTGCAACCATTGACA
AGTGAATTCCCTCACTTTTTTAACAAAGAGGATCTTGCGTTGCCCGGGGAACTTGAGCCATTTTCCAAGAAAGCATCCCTTATGGCTGCTCTCGA
CTACATAGTAACCGAAAATAGCAATGTTTTCATGCCATCTCATGGTGGAAACATGGGACATGCTCTCCAGGGACAAAGGGCCTATGCAGGGCACA
AAAAGACTATCACTCCCAACAAAAGACAGATGCTTCGACATTTTCTGAACTCATCACTTTCTGAAACAGAATTCAACAGAATAATACTGGACTTG
CATAGAGATTCCTTAGGTCAGCCAGAATTGAGGAAACCAGGAAGGGATGTAACAAAGTACCCTGTCCCAGAGTGCATGTGCAATGGTACTATGAA
CCATTCATCGACATAACTCCATATCGGTGAAATAACATGTGATGAAGCACCCCTGCAGCTAATCATACATTCTTACAACATCCTGAGAACTTTGG
ATTAAGCCTCACTGTGATTCAGACGAGCAGACGGGGTTGGTAGAGGTGCAATACAATTTTTTTCGACTATGTTTAGAGGTGAATCCTTGGTGGGT
ATAAACTTGTGGTACATGAGACTGATGCAACAGACTGGGAAAATGAATCTCTAATACAAAAGCACATCTTATACAGTCCAATCCTATTTCTAGAA
CTGTATGTTAATATGTTTAATGAACACAGCTTCTTTTAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378490] | SGN-U565042 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1263 [Download][View] | Facility Assigned ID: TUS14L8.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |
Working
