EST details — SGN-E378475
| Search information |
| Request: 378475 | Match: SGN-E378475 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C185210 | Clone name: TUS-46-M16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185210 is on microarray TOM1 spot ID 1-1-1.1.12.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C37336 [cLEG-41-M11] | Trace: SGN-T71890 | EST: SGN-E258858 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C185210 [TUS-46-M16] | Trace: SGN-T199072 | EST: SGN-E397746 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378475 | Length: 241 bp (1182 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378475 [] (trimmed)
ATTATTGATAAAACAGAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTATAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATA
GACAAGTCACTTTTGCAGAGAGGAGAAATGGATTGCTCNAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTC
TCTAATCGTGGGAAACTCTATGATTTCTGCAGCACAAACAATATGCTCAAA
GACAAGTCACTTTTGCAGAGAGGAGAAATGGATTGCTCNAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTC
TCTAATCGTGGGAAACTCTATGATTTCTGCAGCACAAACAATATGCTCAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378475] | SGN-U581481 | Tomato 200607 | Build 2 | 89 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1880 [Download][View] | Facility Assigned ID: TUS46M16.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.888 | Expected Error Rate: 0.0238 | Quality Trim Threshold: 20.5 |
Working
