EST details — SGN-E378394
| Search information |
| Request: 378394 | Match: SGN-E378394 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C178514 | Clone name: TUS-29-F16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178514 is on microarray TOM1 spot ID 1-1-1.2.4.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72149 [cLER-1-E9] | Trace: SGN-T91835 | EST: SGN-E280281 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C72149 [cLER-1-E9] | Trace: SGN-T91836 | EST: SGN-E280282 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C178514 [TUS-29-F16] | Trace: SGN-T184193 | EST: SGN-E371426 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178514 [TUS-29-F16] | Trace: SGN-T184194 | EST: SGN-E371427 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378394 | Length: 724 bp (1197 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378394 [] (trimmed)
GATCCCCCGGAGCTGCAGGAAAGGGAAAACATACAAGATAAGCAAAGCCCCTGAATCGAAGACTGTTATTTAAAGTAAGTGTCTTCCCCAGCCAA
GAAAATGGCTTAATTCAGTTTTAGAAACATAGAGATTCACATGCATTGGAAGTCATATGACATATCTTCCCTCACTTTTTAACATTTCTCTACAA
ATCATAAAGCTCATTGCAATAGAGAAGTTATCAACTAGTTGATAACAGAAAGAGTTGGCAATAACAGATAGAAGGCCAACTAATAACAAAGCCTT
CATGCTGATGAGAACAGCAGTCGGCTTAGTAGTGTTGTGACCAGTTAGCAGCACTACCCACTCTGGGCATGCCTGAATCCACTTTCTTAGACTCT
GGGTCCACCTTAAAATTTGCTCCACACACCTCGCCTGAGCTGTCCACCCTCGGTACTGATTTCAACTCATTGCGTGCTCGAGTTTTTTTTTTTTT
TTTTTATAACCAAAATGACGATTTTTTATATTTATTCCCCCAAAAGGGTTTTTTATTGCCCCCCCCAGACAACTGAATATTATAGTAACAAAAAA
GCCAAAAACCCCCCCCCAGAACTGATTTAAAAGACCAAAAACCAATATTACTACTATGGTATAGCATACTAAAAAGGAGAATTAGACTTTTATCA
CTAACATATCTTCTCCATTTCCTCATCCTCGTTCTCACTCCAACAGTTATTAAGGATTG
GAAAATGGCTTAATTCAGTTTTAGAAACATAGAGATTCACATGCATTGGAAGTCATATGACATATCTTCCCTCACTTTTTAACATTTCTCTACAA
ATCATAAAGCTCATTGCAATAGAGAAGTTATCAACTAGTTGATAACAGAAAGAGTTGGCAATAACAGATAGAAGGCCAACTAATAACAAAGCCTT
CATGCTGATGAGAACAGCAGTCGGCTTAGTAGTGTTGTGACCAGTTAGCAGCACTACCCACTCTGGGCATGCCTGAATCCACTTTCTTAGACTCT
GGGTCCACCTTAAAATTTGCTCCACACACCTCGCCTGAGCTGTCCACCCTCGGTACTGATTTCAACTCATTGCGTGCTCGAGTTTTTTTTTTTTT
TTTTTATAACCAAAATGACGATTTTTTATATTTATTCCCCCAAAAGGGTTTTTTATTGCCCCCCCCAGACAACTGAATATTATAGTAACAAAAAA
GCCAAAAACCCCCCCCCAGAACTGATTTAAAAGACCAAAAACCAATATTACTACTATGGTATAGCATACTAAAAAGGAGAATTAGACTTTTATCA
CTAACATATCTTCTCCATTTCCTCATCCTCGTTCTCACTCCAACAGTTATTAAGGATTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378394] | SGN-U577782 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1495 [Download][View] | Facility Assigned ID: TUS29F16.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.950 | Expected Error Rate: 0.0054 | Quality Trim Threshold: 20.5 |
Working
