EST details — SGN-E378368
| Search information |
| Request: 378368 | Match: SGN-E378368 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175691 | Clone name: TUS-22-A1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175691 is on microarray TOM1 spot ID 1-1-8.1.11.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C15759 [cLED-13-N3] | Trace: SGN-T51733 | EST: SGN-E236455 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175691 [TUS-22-A1] | Trace: SGN-T180479 | EST: SGN-E367865 | Direction: 5' | Facility: INRA |
| Clone: SGN-C175691 [TUS-22-A1] | Trace: SGN-T180535 | EST: SGN-E367921 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378368 | Length: 525 bp (1173 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378368 [] (trimmed)
CGGAGGCTATCCACTTTCAGTTATTATGCTCGAGGATATAGACGAAGCAAATGTGCTAGTTCGTGGGAGCATAAAACGAGCCATGGACAGAGGTA
GGCTTACAGATTCACATGGCCGTGAGATTAGTCTCGGCAATGTTATATTCATTCTTACTGGAAATTGGTCTACAATGAGCCCCGAGAGCTACAGG
AATGAGTATCTGATGGAAGAAAAGAAACTGGTCTCGCTAGCCAGTTCCGATTGGCAGTTAAGGTTAACAGTTGGTGAAAAGAGCGCTAAGCGCAG
AGCGAGTTGGTTGCATGATCAAGACAGACCTANGAAAGAATTAAATCTAGGTCTCTCTTTCGATCTAAACGAAGCAGCAGAGTTCGAGGATTATA
GAACTGATGGATCACACAATTCAAGTGATCTAACTGTTGAGCGCGAAGAAGATCCTCATCTTTGAAACAGGCGATTCTCAGTTACATCAGTTCCT
CACGAGCTCGTCAGCTCCGCGGATGACACTATCCCATTCAAGCCCAATTG
GGCTTACAGATTCACATGGCCGTGAGATTAGTCTCGGCAATGTTATATTCATTCTTACTGGAAATTGGTCTACAATGAGCCCCGAGAGCTACAGG
AATGAGTATCTGATGGAAGAAAAGAAACTGGTCTCGCTAGCCAGTTCCGATTGGCAGTTAAGGTTAACAGTTGGTGAAAAGAGCGCTAAGCGCAG
AGCGAGTTGGTTGCATGATCAAGACAGACCTANGAAAGAATTAAATCTAGGTCTCTCTTTCGATCTAAACGAAGCAGCAGAGTTCGAGGATTATA
GAACTGATGGATCACACAATTCAAGTGATCTAACTGTTGAGCGCGAAGAAGATCCTCATCTTTGAAACAGGCGATTCTCAGTTACATCAGTTCCT
CACGAGCTCGTCAGCTCCGCGGATGACACTATCCCATTCAAGCCCAATTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378368] | SGN-U574154 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1375 [Download][View] | Facility Assigned ID: TUS22A1.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0106 | Quality Trim Threshold: 14.5 |
Working
