EST details — SGN-E378367
| Search information |
| Request: 378367 | Match: SGN-E378367 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175387 | Clone name: TUS-21-D9 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175387 is on microarray TOM1 spot ID 1-1-8.4.13.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C15170 [cLED-11-C17] | Trace: SGN-T51274 | EST: SGN-E235264 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175387 [TUS-21-D9] | Trace: SGN-T190511 | EST: SGN-E377749 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175387 [TUS-21-D9] | Trace: SGN-T190512 | EST: SGN-E377750 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378367 | Length: 782 bp (1166 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378367 [] (trimmed)
GAATTCGGAACCAGAAAGCATCGAATGTGGAAGGGAAGCTACCAAAACCAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGT
CTAACTCAGGCTGACATGATCGCCCTTTCTGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCC
TAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACA
TGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACA
GACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGT
TGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATT
CTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATA
GGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCT
ATTGTGGGATGTGTAATTGNTG
CTAACTCAGGCTGACATGATCGCCCTTTCTGCGGCCCATTCTGTTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCC
TAAAAATCCAATAGACCCAACCCTTAACAAGCAATATGCAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACA
TGGATCCCAAAACTCCAAGGACATTTGACAATAATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACA
GACAAAAGGTCCAAGGGAACTGTGGATCTTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGT
TGGTGTGAAGACGGGGAGGAACGGAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATT
CTGTCCCAGTTAGCTTAATGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATA
GGAGTTTATTTATATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCT
ATTGTGGGATGTGTAATTGNTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378367] | SGN-U580841 | Tomato 200607 | Build 2 | 102 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1368 [Download][View] | Facility Assigned ID: TUS21D9.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.953 | Expected Error Rate: 0.0012 | Quality Trim Threshold: 12.5 |
Working
