EST details — SGN-E378256
| Search information |
| Request: 378256 | Match: SGN-E378256 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C175097 | Clone name: TUS-20-H7 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175097 is on microarray TOM1 spot ID 1-1-2.4.14.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23948 [cLED-6-M19] | Trace: SGN-T49937 | EST: SGN-E232951 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175097 [TUS-20-H7] | Trace: SGN-T189975 | EST: SGN-E377476 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175097 [TUS-20-H7] | Trace: SGN-T189976 | EST: SGN-E377477 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378256 | Length: 935 bp (1170 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378256 [] (trimmed)
ACAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCAC
TAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAA
GTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTT
CAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATA
TAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCA
GGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTT
CTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTT
TGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGN
AGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAA
TGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACGAACCAGTCAAAGAACTGTGATCATCGTCTTTGAAT
TAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAA
GTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTT
CAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATA
TAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCA
GGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTT
CTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTT
TGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGN
AGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAA
TGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACGAACCAGTCAAAGAACTGTGATCATCGTCTTTGAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378256] | SGN-U584124 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1345 [Download][View] | Facility Assigned ID: TUS20H7.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.960 | Expected Error Rate: 0.0082 | Quality Trim Threshold: 14.5 |
Working
