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EST details — SGN-E378081

Search information 
Request: 378081Match: SGN-E378081
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175688Clone name: TUS-21-P22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175688 is on microarray TOM1 spot ID 1-1-3.4.13.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C15756 [cLED-13-N22] Trace: SGN-T51939 EST: SGN-E236661 Direction: 5' Facility: TIGR
Clone: SGN-C175688 [TUS-21-P22] Trace: SGN-T190694 EST: SGN-E378080 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E378081Length: 610 bp (892 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E378081 [] (trimmed) GGTAGATGCTCAACTCAAAACCAATTTTTATGCCCAAACTTGTCCTAATGTTGAATCCATTGTGCGTAATGTTGTTAACCAGAAATTCAAACAAA
CGTTTGTCACAATTCCGGCTGTTCTTCGTCTTTTCTTCCATGATTGCTTTGTTGAGGGTTGTGATGCATCGGTGATAATAGCATCAACGGCAGGG
AACACAGCAGAAAAAGATCACCCAGATAATCTTTCATTGGCTGGAGATGGATTTGACACAGTTATCAAAGCAAAAGCCGCAGTTGATGCGATCCC
AAGTTGTAAAAATAAAGTTTCTTGTGCTGATATTCTTGCCTTAGCCACTCGAGATGTTATTCAACTATCCGGTGGACCGGGGTATGCAGTGGAAT
TGGGGAGATTAGATGGTTTGACATCAAAATCTACAAATGTAGGGGGAAAGTTGCCTAAACCTACTTTCAATTTGGATCAACTCAATACAATGTTT
GCCTCTCATGGTTTAAATTAGGCTGATATCATTGCCTTTATCTGCGGCCCATACTGTTGGATTTTCTCACTGCGACCAATTCTCGAACCGAATTT
TTAACTTTAACCTTAAAAACCCAGTGGATCCAAGTTTTAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E378081] SGN-U580684 Tomato 200607 Build 2 40 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190695 [Download][View] Facility Assigned ID: FA0AAD9DH11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0037 Quality Trim Threshold: 14.5