EST details — SGN-E378054

Search information 
Request: 378054Match: SGN-E378054
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175546Clone name: TUS-21-J24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175546 is on microarray TOM1 spot ID 1-1-1.2.13.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C15453 [cLED-11-P2] Trace: SGN-T51601 EST: SGN-E235591 Direction: 5' Facility: TIGR
Clone: SGN-C175546 [TUS-21-J24] Trace: SGN-T190667 EST: SGN-E378053 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E378054Length: 562 bp (894 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E378054 [] (trimmed) CTCTCTCTGAGGCTCATTTGCTATGGAAGCGGAGCAAACCTCCCAAAGATCCTACTAGATATAATCTGACACGGTTCGCAATTACAATGAATGAG
CTCATACCTGGACTGAAGGACAAGCTGCCACCAACAGATTCTAGACTTAGACCTGATCAGAGGTGCTTGGAGAATGGTGAGTATGACAGGGCTAA
TTCAGAAAAGCTGCGTCTTGAGGAACGGCAACGACAGGCTCGGAAAATGCAAGAACGGGGTTGGAAGCCTCAGTGGTTTGCAAAAGAGAAAGGGG
GTGATAGTTACAACTACATTGGTGGTTATTGGGAAGCAAGGGAGAAGGGCAAGTGGGAGGCCTGTCCTGATATTTTTGGTCATATCCCTTGTGAT
CAGATGTAAAGAAAGAGTGAGTGAAACTCTAAATCAATTTCCGGCTTATTACTTCCATTTCTTTACAAATATTTTACACAATCATTATACAGTAC
ACTAGTGGAGAGGGTGCAAATTGTTTATGACATATGTAAAGTAGTACTTTGAATACCTTAAAAGTAATAAAGGTTTCATTCTTTTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E378054] SGN-U585642 Tomato 200607 Build 2 6 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190668 [Download][View] Facility Assigned ID: FA0AAD9DE12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0004 Quality Trim Threshold: 12.5