EST details — SGN-E378000

Search information 
Request: 378000Match: SGN-E378000
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175236Clone name: TUS-20-N2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175236 is on microarray TOM1 spot ID 1-1-7.2.13.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24153 [cLED-7-F6] Trace: SGN-T50428 EST: SGN-E231919 Direction: 5' Facility: TIGR
Clone: SGN-C175236 [TUS-20-N2] Trace: SGN-T190221 EST: SGN-E377999 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E378000Length: 710 bp (895 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E378000 [] (trimmed) CAGATCAGATAGACTGGGGGAGGATTTCTCGGAGCAATATAAGGACTTTACTGAGAGATTAAGCACAGTTGAGGATTTGGCCAGGGCTATGATCA
AGAAATTAACCCAAGGGATGGCAGATCAAAATAAAGCTCTTGCTGCTGCTAAAACAGAAGAAGAAAAGGATGCTATTAAAACCCAAAAGCTTAAT
GCTACCTTTGCGCTCCGAGCTTGCAACAATATATTAGCAATGACCCAGCCATTGAATGCAAAAACACCAAAATTTATAGGCGATCAAAAAACAAA
TTTGTCATGGAAAGAAGCTGCGAAGCCTTCAGGTCCTTCAACTGCTACTGTTGCAGGTCAGAAGCGACCGGCTGCTACGACAAATGGGTCAAACA
ATAACCCTTTAAAAAAAGGCCGAGGAGCCGGTGGTACGCAACACCAGCTGGTTAACAAGGCATTTTCGGGTATCTATGATAGTGGAAGAAGCAGT
GGAAGAGGTGGTAGGAGTTGGCGTGGTCGTGGAAGAGGACGGTCATATCACTAACGTGTTCATTCCACTGTAGCGTTAAATTAGTTGCAGAACAA
TCAGGTGATTTTTCCCGCTGGTATGAATTGGATATATCTTGTGGCGAGCTGAACAATTANGTGATCTTTACCATTGGTATGATCTGGACATATCT
TATGGCGACCCAGACGACTTATTAGGCAGGTTCATTGACGGAGGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E378000] SGN-U572967 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190222 [Download][View] Facility Assigned ID: FA0AAD8DG01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.989 Expected Error Rate: 0.0067 Quality Trim Threshold: 14.5