EST details — SGN-E377941

Search information 
Request: 377941Match: SGN-E377941
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175302Clone name: TUS-20-P20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175302 is on microarray TOM1 spot ID 1-1-5.4.13.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24265 [cLED-7-K7] Trace: SGN-T50325 EST: SGN-E231816 Direction: 5' Facility: TIGR
Clone: SGN-C175302 [TUS-20-P20] Trace: SGN-T190164 EST: SGN-E377942 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377941Length: 789 bp (921 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377941 [] (trimmed) ATTTAGTGAAGGATTAAAACTAGACATTGAGTATAGCAAGGAGATTTAGCAAAAACAAAAATCCATAAAGATTCAGTTTTTTTTCCTGTTTTTGA
GAGATTTAAGAGAACCCCATTAAAATTTAATCTATTTATCTATCTGGGTGTGTGTTTAAAATGGCTGAAAGAAAAGGAAACAAGAAAAGATTGTG
TATAAATCTTTCCCTTTTTACCCTAACTGATAACAACAGCAGCAGCAGCAGCAATAAATCTCCTAAAAAGTTTGAGGACCCAAATGGTGCTGTTG
TTGGGCTTGGAATTGTGGCAGCTATGAATAAGGAGAGCAATAGTAGAGCTGCAATTATTGCTATATCTCCAAGATCAACTACTTCAAACCCAATC
CCAATTTTTACTAGTTTTAAGAAGAAGCCTAGTATTGAAGAAATGGAGATGTGTGAGGAGTATACTTGTGTTATTTCTCATGTTGGTACAAATTT
GGTTAAGAAAAGAGTGTATTTTGATGGTCAATTTATAGGAAATAGCAATTTTAATGCCTACCAGAAAACTGTTAATCATACAACAAGTTTTACTA
TGGCTGATTTCCTCAATTCTTGCTTTCTTTGCAAGAAACAGCTTAAGGGGTTGGATATTTTCATGTACAGAGGGGAGAAGGCGTTTTGTAGTGCA
GAGTGTCGTTGCACACAGATATCATTCGATGAACACAAAGAGAAATGTGGTTCTGAAGCTATGAAATCACTTAGCGACTACTCTGTTTCTCCTTG
CTCGGGTCCAATGCAGTTTTTCACTGGTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377941] SGN-U578016 Tomato 200607 Build 2 42 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190163 [Download][View] Facility Assigned ID: FA0AAD8DH10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.954 Expected Error Rate: 0.0119 Quality Trim Threshold: 14.5