EST details — SGN-E377880

Search information 
Request: 377880Match: SGN-E377880
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174968Clone name: TUS-20-B22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174968 is on microarray TOM1 spot ID 1-1-3.2.13.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23804 [cLED-6-G17] Trace: SGN-T49929 EST: SGN-E232943 Direction: 5' Facility: TIGR
Clone: SGN-C174968 [TUS-20-B22] Trace: SGN-T190101 EST: SGN-E377879 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E377880Length: 626 bp (889 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377880 [] (trimmed) TATTGCCGAGGATATCACCGGGGAAGCTCTGGCCACTCTTGTTGTGAACAAGTTGCGAGGTATACTGAATGTTGCTGCCATCAAAGCTCCTGGAT
TTGGTGAAAGGAGAAAGGCTCTTCTGCAAGATATTGCCATTGTGACAGGAGCTGAGTACCAGGCAACTGATTTGGGCCTGCTCGTTGAGAATACC
CCAGTTGAAGCACTTGGAATTGCCAGAAAGGTGACAATTACCAAGGACTCAACAACCATCATCGCTGATGCAGCATCAAAGGACGAGATACAATC
TAGGATTGCTCAGCTTAAAAAGGAACTGTCTGAGACAGATTCAGTGTACGACTCCGAGAAACTTGCTGAGAGAATTGCCAAGCTTTCTGGGGGTG
TCGCCGTCATTAAGGTTGGAGCTGCAACAGAGGCCGAGCTTGAAGACCGCAAGCTTCGTATTGAAGATGCAAAGAATGCAACTTTTGCTGCAATT
GAAGAGGGAATAGTACCTGGTGGTGGTGCTGCTTTTGTTCATTTATCAACTTATGTCCCTGCCATTAAGGAGAAGATTGAAGATGCTGATGAAAG
ATTGGGCGCTGACATCATTCANAAGGCATTGGTAGCCCCAGCATCTTTGATAGCCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377880] SGN-U579512 Tomato 200607 Build 2 185 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190102 [Download][View] Facility Assigned ID: FA0AAD8DA11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.985 Expected Error Rate: 0.0135 Quality Trim Threshold: 14.5