EST details — SGN-E377623

Search information 
Request: 377623Match: SGN-E377623
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175076Clone name: TUS-20-G10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175076 is on microarray TOM1 spot ID 1-1-7.3.13.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23927 [cLED-6-L21] Trace: SGN-T49987 EST: SGN-E233001 Direction: 5' Facility: TIGR
Clone: SGN-C175076 [TUS-20-G10] Trace: SGN-T189835 EST: SGN-E377624 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E377623Length: 589 bp (933 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377623 [] (trimmed) AGAATTAAAGAGTATAAATTTCTTACCTATTCAAAAATAATGACAACTACTAAACAATAGATATAACCCCTAATTTTCTCCCTAATTAGTGAAAA
TATTACCCCAAAAAAAGCAAGAAAATTTTGAGAATTTAACTAGAAGATGGAGGATATTGGCTAGAGCTACTCCAAAATGTTGTAGAAAAACTTGA
GCTGCTAGTGGTGCTGGTGCTACTTGTGTTGGTTCCTTGAATTTGATTAGTTTGTGGTGTGTAATAACTCGAAAATAACAGGGGATATGACGTTG
AAGAAGTTGCTGATGTAGCTAACGATGAAGACGAAGATATTAATGGCAATGTGTTTGAATGCAACATTGCCATCGATGAGGCAACGAACATTTGT
TCCAATAAGTTTGATGGTTGTTGATCCGTAAAATCTCCTGGATTTTGCAACAATTGTGAGTATTCCCAGTAGTCTCTTGTTGTATCTGAACTCTG
GATAGGATTGAGGAACGACGTTGGTTGAGCTATTAGAGGGGATGGATTGGAGATTGTTGACGTTACAGTATTTTGTGTTTGTGGTAACGATGACA
ATCTGGCGTTCTCAGGGGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377623] SGN-U577088 Tomato 200607 Build 2 43 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189834 [Download][View] Facility Assigned ID: FA0AAD8BD05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.947 Expected Error Rate: 0.0038 Quality Trim Threshold: 14.5