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EST details — SGN-E377538

Search information 
Request: 377538Match: SGN-E377538
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175007Clone name: TUS-20-D13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175007 is on microarray TOM1 spot ID 1-1-4.4.13.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C175007 [TUS-20-D13] Trace: SGN-T190038 EST: SGN-E377539 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377538Length: 682 bp (919 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377538 [] (trimmed) GTGAAACACAATGTAACAAAATAAATAGTTACAAATTGAAGAAGTTATTTGGATGGGATAAATTCCATCAAGTTACAGAAAAAAGAAAAGACCAA
ACCAATTGGATACTAAGATGTCTAGCTAGAGCTAAACAAAAGTTGACAAGAAACAAAACTTGATAGCTACACAGATTTTAACTTGCTGAAATAAA
ATAGATAATGCTTCACTGATTTACGGCGTTGAGCAGTCTTCAGATATCATAGCTAGGTCTCCTTACCGGCTAACAGAGGAGTGGAAGTTGCAGAG
AAACCAACTCCATTAGACTCGGGGGTGGAGCACTCAGGCGATTTCTTGCTGAGGCCATATGGTGCTAAGTTCATCACCCTTTCCTTGCGCTTCTC
CAGAAAACGAGCCAAAGATGCTTTCCTAGCTTGTGGAACCGCTGCTGTCATTATGGTAGTCGCCCCAACAGGTCCTAGTGATGTCACAATCTTTG
AAGTGTCCAATTTGACATGGGGAGTCACTGAAATGTTTGCAGTTTTAGACATCTTCATGTCATCTTTGTTTCCAGAACTGCCATCAGATTGACCA
ATGGGATGGGAAGAAACGGACATAGGGCTAGAAAGACCCGAGGCAGGCAGCATGTTTGGGGTTTGGTTCACACAAACACCATCTGCAGCAGCAGG
TTTCGATGCAAATGCCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377538] SGN-U564449 Tomato 200607 Build 2 121 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190037 [Download][View] Facility Assigned ID: FA0AAD8CB07FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.975 Expected Error Rate: 0.0054 Quality Trim Threshold: 14.5