EST details — SGN-E377480

Search information 
Request: 377480Match: SGN-E377480
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175105Clone name: TUS-20-H15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175105 is on microarray TOM1 spot ID 1-1-2.4.13.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23956 [cLED-6-M4] Trace: SGN-T49960 EST: SGN-E232974 Direction: 5' Facility: TIGR
Clone: SGN-C175105 [TUS-20-H15] Trace: SGN-T189980 EST: SGN-E377481 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377480Length: 656 bp (928 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377480 [] (trimmed) AAACAGGAAAAAAAAACGGGGGCTTTAACTTTCATCTATAAAAAAAATTTAGTCCAAAGATAATATCACTTTCATTTATCCCAAACAACAAACTG
ACAAGAAAAAAAATTAAAAAGAGCTGGGCAGTAAAAACTATTTGAATTACATATTTTATATTTAAGGGAACAACTTTAGGAACCTTCGGTTCTGG
GGGCCTTAAGCAAGGGGCCTATGGGTAGAGCCCCCTGAAAACAAATTCTCAAACAATTGGGGGGCCATTTCCGGAAGATTTACGGGCTGATTAGG
AGCCATAAAATTGACAATCTTTTCATGAATATTGGACCGGATTTTACGACTTTTTGAAGCACGACGATCAACAATTTTTCGTTTTTTTGTTTGTA
GTCTCTTCAATGCATAAAAGGCTGTCTCAAATGAGGCGGGATCTACAGCCTCAAAGAACTCCCTCAGCAATTGCTGATAGAATTCAGAGTCATCC
AAAAGCTCCGGATCACCATCCATGTTTGTTCCCTCTCCATTGCCAGTAGCATCTGGAACAGTTCCAAATAGGGCAACTGCCGATCTACTTTGCTG
CATTCCCTTTATCATTTTGCTAGGATCTCTCATATAACCAGCTACTTGTTGACTAATATCCTGATTAAATGCTTGCAATTTGCCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377480] SGN-U565795 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189979 [Download][View] Facility Assigned ID: FA0AAD8CD08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.940 Expected Error Rate: 0.0148 Quality Trim Threshold: 14.5