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EST details — SGN-E377039

Search information 
Request: 377039Match: SGN-E377039
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C175225Clone name: TUS-20-M15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175225 is on microarray TOM1 spot ID 1-1-2.1.13.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24139 [cLED-7-F15] Trace: SGN-T50393 EST: SGN-E231884 Direction: 5' Facility: TIGR
Clone: SGN-C175225 [TUS-20-M15] Trace: SGN-T189795 EST: SGN-E377040 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E377039Length: 625 bp (918 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E377039 [] (trimmed) AATGCATTTTTTTATTCTCATCGAGTGTATAAACTATGCAACTTAAAACAACAAGGGGGGAGGCTAAATCTAAAATAAAAATGCCAAAAAAGGAA
AATCACGAAAGAACTAGAGGATATTCCTGGAGGTTACATGTTTGTGGTTCATCATTCTCTGCTCTTCAAAAGGATGCCCATGCTGCTCCAGTCTC
CGGTAGGAACAGGTTCACTGTTGAACTAGGCTTGAAAAGGCCAAGCTTTTCCAGCAGTCTATTGAATAGTATGCCTGCTGCATAAGATACACCGG
AAACCGTGAAGCCTAAAACAATGTAAGTTGATATAGTTTTGAAGTAAGGTTTGGGTGCTCTCTGAACATAGGCCTTTCCAGTAGCCAGCATTAAG
ATGCATACAAGTGAAGCTGCAGCAACTGCCACAATCTTGAGGTCCTTGTCATCGCTCTTACGGAATGAGAAGCCATAGGTTACGGGAGGCAATAG
TCCAAATATGATATATGATAATATAACAAGTACAACATGCAGTATGAAGTTCTCTCTCCGGCCAAGTTGTTCTCGATATCTATCTACTTGGTTTT
CCATTATCTGATTGCTGGCTTGCTCGAAACGATCTCTTTTCACCTTCCAAAGATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377039] SGN-U564743 Tomato 200607 Build 2 18 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189794 [Download][View] Facility Assigned ID: FA0AAD8AG08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0109 Quality Trim Threshold: 14.5