EST details — SGN-E376440

Search information 
Request: 376440Match: SGN-E376440
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173859Clone name: TUS-17-D17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173859 is on microarray TOM1 spot ID 1-1-8.4.17.6 [Order] [Tomato Microarray Database]
See unigene SGN-U579445 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C173859 [TUS-17-D17] Trace: SGN-T189053 EST: SGN-E376439 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E376440Length: 729 bp (907 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E376440 [] (trimmed) CTAGATTTTTTGGAGCCCCCGGGCTGCAGGGTCATCACAGGGACCACCACATGATGAGATTGATTTTGAATTCTTGGGAAATTTACGCGGTGATC
CTTATACTCTCCATACTAATGTATTTAGTCTAGGCAAAGGAAACAGAGAACAACAATTTCATCTTTGGTTTGACCCTACTGCTGATTTCCACACT
TATGCCATCAATTGGAATCCACAACGCATCATATTATATGTGGACGGAACGCCAATTAGAGAATACTAGAATAGTGAATCGATTGGAGTTTCATA
TCCAAAGAACCAACCCATGAGGATATATTCGAGTCTTTGGAATGCTGATGATTGGGCTACAAGAGGAGGCCTTGTTAAGACTGATTGGAGCCAAG
CACCCTTTAGTGCTTTTTACAGAAACTTCAATGCTAATGCTTGTATTCCCACTTCTTCATCTTCTTGCAGTTCCATTTCTGCAACTTCAACAAGC
AATTCATGGTTGAATGAAGAGTTAGATAACACAAGCCAAGAGAGGCTCAAATGGGTGCAGAAGAATTACATGGTTTATGATTACTGCACTGATTT
AAAGCGATTTCCACGGGGATTTCCAGCAGATTGTGTTCAGAATATCTGAGCATTAATAATGAAAAAATAGTGTATTACTTTAAAAACTATTGTAT
TGATTCTTTTATTGTTTTGTCCCATCATAAGAAGATGCAATAATTATTGAGGATTAGAAACATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E376440] SGN-U579445 Tomato 200607 Build 2 169 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189054 [Download][View] Facility Assigned ID: FA0AAD5CB09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0363 Quality Trim Threshold: 12.5