EST details — SGN-E375416

Search information 
Request: 375416Match: SGN-E375416
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173330Clone name: TUS-15-N16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173330 is on microarray TOM1 spot ID 1-1-1.2.20.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C2071 [cLEC-14-L23] Trace: SGN-T26319 EST: SGN-E204703 Direction: 5' Facility: TIGR
Clone: SGN-C173330 [TUS-15-N16] Trace: SGN-T189031 EST: SGN-E375417 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E375416Length: 505 bp (918 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E375416 [] (trimmed) AATGCAGATATTTATTCTTATCGAGTGTTTAAACTCTGCAACTTAAAATAACAAGGGGGGAGGCTAAATCTAAAATAAAAATGCCAAAAAAGGAA
AATCAGAAAGAACTAGAGGATATTCCTGGAGGTTACATGTTTGTGGTTCATCATTCTCTGCTCTTCAAAAGGATGCCCATGCTGCTCCAGTCTCC
GGTAGGAACAGGTTCACTGTTGAACTAGGCTTGAAAAGGCCAAGCTTTTCCAGCAGTCTATTGAATAGTATGCCTGCTGCATAAGATACACCGGA
AACCGTGAAGCCTAAAACAATGTAAGTTGATATAGTTTTGAAGTAAGGTTTGGGTGCTCTCTGAACATAGGCCTTTCCAGTAGCCAGCATTAAGA
TGCATACAAGTGAAGCTGCAGCAACTGCCACAATCTTTGAGGTCCTTGTCATCGCTCTTACGGAATGAGAAGCCATAGGTTACGGGAGGCAATAG
TCCAAATATTATATATGATAATATAACCAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375416] SGN-U564743 Tomato 200607 Build 2 18 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189030 [Download][View] Facility Assigned ID: FA0AAD3DG08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0012 Quality Trim Threshold: 14.5