EST details — SGN-E372474

Search information 
Request: 372474Match: SGN-E372474
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C179594Clone name: TUS-32-C16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179594 is on microarray TOM1 spot ID 1-1-1.3.1.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C82456 [cLET-1-P21] Trace: SGN-T102695 EST: SGN-E292421 Direction: 5' Facility: TIGR
Clone: SGN-C179594 [TUS-32-C16] Trace: SGN-T185968 EST: SGN-E372473 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E372474Length: 638 bp (920 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E372474 [] (trimmed) GCAGAGACAAGTTCACTACATAACTCCTTGGAATCTAGATACATAAGAAACTGACATGCTGCCCAGACGCTGAACCTTGGTTTCTGATCTTTTGT
TTACAAAAGATACATAGAAAGGAGCTCAAATGAGTTATTTTATTCAACAAAGCAAGACAATAAATAGTGATAACAAACATACGATACAAATGGTG
AACATCCATGGGACTGATCAAGCACAAGAACCATGAATTGGGGGAGCATAAATCTGCAAAATGACATGCGTGAAACACTTCATCCATATAAAATT
TTAGTTCTTCACTGTGGTTACGTGCCTCAGAAGCATTTGGACAACATCAGCAGAGACTCTTGACGCTTCAGTCTTCAGGTGTTCGATCTTTTCAT
TAGTTTCAATCTCAAGACGTTTGACATTAGCACCTGAGTCACCACTAGTCTGTTCAAGCTTTCTTTGAAATTCAGCCTCCATGTAAGCACGAAAT
TCAGCTATCTCCTTCTCAGCTTCCTCCTTGGCCTGCTTCAATCTAGCTTGTTTAGCAGTCCTGGCAACATTGACGATGCGTTGGGCTTCCTGCTC
AGCAGCTAAAAGGAGTTGAATTCCATTCTGGCCACCCCTACTAGATTCCATTCTCGTTATAAAACTGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E372474] SGN-U579667 Tomato 200607 Build 2 99 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T185969 [Download][View] Facility Assigned ID: FA0AAD20BB08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0052 Quality Trim Threshold: 12.5