EST details — SGN-E371179

Search information 
Request: 371179Match: SGN-E371179
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C178035Clone name: TUS-28-B17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178035 is on microarray TOM1 spot ID 1-1-8.2.4.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C64448 [cLEM-6-C7] Trace: SGN-T84374 EST: SGN-E270618 Direction: 5' Facility: TIGR
Clone: SGN-C178035 [TUS-28-B17] Trace: SGN-T183538 EST: SGN-E371178 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E371179Length: 666 bp (885 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E371179 [] (trimmed) GATCATCGAATTTATTCCGTCGGAAATTGCCCATAGTAGGCGCTTTCTGTGTTCTTACTTTTGGTCTTTCTAATCTCTCTGTCCCTTTTACTAAT
ACAGGTTTTGCTCATTCACTTCCCTTTCCCCCTCTTCTGCGGTCGAAATTAGGTGGTGAAAGACGAAGTACAAGTGTTAGTAGAATAAGAATGGA
AGCTAGCAGCAAGATTGTTCCAAGCATTGTTGTTTATGTCACTGTTCCTAACAAAGAATTGGGTAAGAAACTGTCAGGGAGCATAGTCAAGGAGA
AACTTGCAGCATGTGTTAATCGAGTACCAGGTGTAGAATCGGTTTACGAGTGGCAAGGAGAGATACAGACCGATTCTGAAGAGCTGCTTATAATC
AAGACCAGGGAATCCCTTTTAGAAGCTCTTACGGAGCACGTGAAGGCCAACCATGAATATGATGTTCCTGAAGTGATTGCCATGCCCATAGTTGG
TGGCAGTCCACAGTACCTAGAATGGCTCAAGAACAGCACAAGGGATGAATGATTTAGACCAAGACAAGCTTGTTCAACCTTGAGCCTGTAACTTA
GTAAGAGTCGAACACAAACGTCTATGTTATTTGGTATTTTCAAAGTACTTGTTACTTAAACGGTGTTGTTAGTCTTGGCTCTTGGTCTGAGTTAC
T
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E371179] SGN-U568424 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T183539 [Download][View] Facility Assigned ID: FA0AAD16CA09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0063 Quality Trim Threshold: 12.5