EST details — SGN-E307233
| Search information |
| Request: 307233 | Match: SGN-E307233 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C96401 | Clone name: cLEY-15-N18 |
| ||
| Library Name: cLEY | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: root
Development Stage: pre-anthesis/pre-fruit loading
Microarray: Alias clone SGN-C182496 is on microarray TOM1: SGN-S1-1-3.4.8.19
This clone has been mapped as cLEY-15-N18.
| Additional sequencing |
| Clone: SGN-C182496 [TUS-39-L14] | Trace: SGN-T1727 | EST: SGN-E378607 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C182496 [TUS-39-L14] | Trace: SGN-T191548 | EST: SGN-E390222 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182496 [TUS-39-L14] | Trace: SGN-T191772 | EST: SGN-E390446 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E307233 | Length: 411 bp (1058 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E307233 [] (trimmed)
GTGAAGTTACAATGGACTCTCTGAATGCTTACGCATCGTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTAACAATCGAC
GCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTG
GGCGAGTGACCCTCACTACTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGG
TCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCCATCATTGTAATGGACGCTATTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAAT
GCTCAAGCTGATGCGTATGAATATATGGTCG
GCGCCGTCGGGGTCGAAACCGGAAAACTCCGCGTCGGACGCTATATTCCACTACGACGATGCGGCACAGACGAAGTTTCAGCGGGAGAAGCCGTG
GGCGAGTGACCCTCACTACTTCAAGCGTGTGAAGATCTCTGCTCTTGCTCTTCTCAAGATGGTTGTTCACGCGCGTTCCGGAGGTACAATTGAGG
TCATGGGACTCATGCAGGGTAAGACTGACGGCGATGCCATCATTGTAATGGACGCTATTGCCCTCCCCGTTGAAGGCACTGAAACTAGGGTTAAT
GCTCAAGCTGATGCGTATGAATATATGGTCG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E307233] | SGN-U585560 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T119656 [Download][View] | Facility Assigned ID: TRYCH81TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0186 | Quality Trim Threshold: 14.5 |
Working
