EST details — SGN-C28862
| Search information |
| Request: 28862 | Match: SGN-C28862 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C28862 | Clone name: cLEF-49-H12 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177026 is on microarray TOM1: SGN-S1-1-1.4.8.6
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177026 [TUS-25-H16] | Trace: SGN-T182136 | EST: SGN-E369647 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177026 [TUS-25-H16] | Trace: SGN-T182137 | EST: SGN-E369648 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E249120 | Length: 519 bp (1050 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249120 [] (trimmed)
TAGAAAACCTTTTGCAGCTCAAATATGAACCAGAATCTGTTTGGGGCTATGTTGAGGTTCACATTGAACAGGGACCTGTACTGGAGAATGTCGGT
CTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAGGTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAA
TATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTC
AATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCA
GGCCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTANGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTG
TGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGCATGATG
CTCCCTCTTGGTTCAGTAAAAGGCATTGCAGGGCAGACAAGATTGAAGGTGACAGTGAAAGGCACACAAGGACATGCAGGGACAGTACCCATGAA
TATGCGACAGGATCCTATGGTTGCAGCTGCTGAACTAATTGTATTTCTGGAAAGTCTTTGTAAACAACCTGACTATTATCTGTCATATGATGGTC
AATGCACATCTTCAACAGTGGAATCTCTTGCAGGATCTCTGGTCTGTACTGTTGGAGAGATATCAACTTGGCCAAGTGCAAGTAATGTCATTCCA
GGCCAGGTCACATTCACCGTAGATGTACGTGCGATGGATGACTTANGACGAGAAGCTATAATTTATGAATTCTCTAATAGACTCTACCATATGTG
TGATAGGCGTTCTGTCTTCTGTAACGTTGAGAGAAAGCATGATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E249120] | SGN-U562909 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T62628 [Download][View] | Facility Assigned ID: TMGHN42TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0075 | Quality Trim Threshold: 14.5 |
Working
